RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.31-612-imx51 #32-Ubuntu Tue Dec 20 16:25:38 UTC 2011 armv7l Buildd toolchain package versions: launchpad-buildd_110~0.IS.08.04 python-lpbuildd_110~0.IS.08.04 bzr_2.4.0-0ubuntu2~9.IS.10.04.3. Syncing the system clock with the buildd NTP service... 24 Jan 02:55:39 ntpdate[21200]: adjust time server 10.211.37.1 offset -0.000117 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa', '/home/buildd/filecache-default/7ae3baf596f9e4dcc35c720d26bc65fac996dd5b'] Unpacking chroot for build 8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa'] Mounting chroot for build 8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa', 'armel'] Updating debian chroot for build 8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Get:3 http://ftpmaster.internal precise/main armel Packages [1260 kB] Get:4 http://ftpmaster.internal precise/universe armel Packages [4652 kB] Get:5 http://ftpmaster.internal precise/main TranslationIndex [3502 B] Get:6 http://ftpmaster.internal precise/universe TranslationIndex [2712 B] Get:7 http://ftpmaster.internal precise/main Translation-en [729 kB] Get:8 http://ftpmaster.internal precise/universe Translation-en [3353 kB] Fetched 10.0 MB in 58s (171 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils cpp cpp-4.6 findutils g++ g++-4.6 gcc gcc-4.6 gcc-4.6-base ifupdown libapt-pkg4.11 libc-bin libc-dev-bin libc6 libc6-dev libdbus-1-3 libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 libdrm2 libgcc1 libglib2.0-0 libgomp1 libp11-kit0 libssl1.0.0 libstdc++6 libstdc++6-4.6-dev libusb-0.1-4 linux-libc-dev lsb-base multiarch-support openssl patch pkgbinarymangler python2.7-minimal upstart 38 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 32.5 MB of archives. After this operation, 1251 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! findutils libdbus-1-3 lsb-base ifupdown upstart libc6-dev libc-dev-bin linux-libc-dev libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 binutils libc-bin libc6 libusb-0.1-4 libssl1.0.0 libdrm2 libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 libglib2.0-0 libp11-kit0 libapt-pkg4.11 apt multiarch-support python2.7-minimal apt-transport-https openssl cpp gcc g++ patch pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main findutils armel 4.4.2-4ubuntu1 [289 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libdbus-1-3 armel 1.4.16-1ubuntu4 [117 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main lsb-base armel 4.0-0ubuntu19 [10.2 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main ifupdown armel 0.7~beta2ubuntu3 [44.4 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main upstart armel 1.4-0ubuntu2 [290 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libc6-dev armel 2.13-24ubuntu4 [2164 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libc-dev-bin armel 2.13-24ubuntu4 [71.9 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev armel 3.2.0-10.17 [818 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 armel 4.6.2-12ubuntu1 [23.6 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base armel 4.6.2-12ubuntu1 [15.8 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 armel 1:4.6.2-12ubuntu1 [22.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 armel 4.6.2-12ubuntu1 [4102 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev armel 4.6.2-12ubuntu1 [1696 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 armel 4.6.2-12ubuntu1 [4978 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 armel 4.6.2-12ubuntu1 [4532 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 armel 4.6.2-12ubuntu1 [269 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main binutils armel 2.22-4ubuntu1 [2262 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libc-bin armel 2.13-24ubuntu4 [1018 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libc6 armel 2.13-24ubuntu4 [3852 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libusb-0.1-4 armel 2:0.1.12-20 [15.5 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libssl1.0.0 armel 1.0.0e-3ubuntu1 [784 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libdrm2 armel 2.4.30-1ubuntu1 [20.9 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libdrm-intel1 armel 2.4.30-1ubuntu1 [51.1 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libdrm-nouveau1a armel 2.4.30-1ubuntu1 [11.4 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libdrm-radeon1 armel 2.4.30-1ubuntu1 [12.0 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-0 armel 2.31.12-0ubuntu1 [1022 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libp11-kit0 armel 0.10-1 [26.8 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libapt-pkg4.11 armel 0.8.16~exp5ubuntu14.2 [833 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main apt armel 0.8.16~exp5ubuntu14.2 [1027 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main multiarch-support armel 2.13-24ubuntu4 [4480 B] Get:31 http://ftpmaster.internal/ubuntu/ precise/main python2.7-minimal armel 2.7.2-13ubuntu4 [1486 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main apt-transport-https armel 0.8.16~exp5ubuntu14.2 [14.7 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main openssl armel 1.0.0e-3ubuntu1 [507 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main cpp armel 4:4.6.2-4ubuntu1 [28.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main gcc armel 4:4.6.2-4ubuntu1 [5122 B] Get:36 http://ftpmaster.internal/ubuntu/ precise/main g++ armel 4:4.6.2-4ubuntu1 [1450 B] Get:37 http://ftpmaster.internal/ubuntu/ precise/main patch armel 2.6.1-2.1 [77.6 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main pkgbinarymangler all 113 [29.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.5 MB in 21s (1538 kB/s) (Reading database ... 14116 files and directories currently installed.) Preparing to replace findutils 4.4.2-1ubuntu3 (using .../findutils_4.4.2-4ubuntu1_armel.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.2-4ubuntu1) ... (Reading database ... 14116 files and directories currently installed.) Preparing to replace libdbus-1-3 1.4.16-1ubuntu2 (using .../libdbus-1-3_1.4.16-1ubuntu4_armel.deb) ... Unpacking replacement libdbus-1-3 ... Preparing to replace lsb-base 4.0-0ubuntu17 (using .../lsb-base_4.0-0ubuntu19_armel.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.0-0ubuntu19) ... (Reading database ... 14116 files and directories currently installed.) Preparing to replace ifupdown 0.7~alpha5.1ubuntu6 (using .../ifupdown_0.7~beta2ubuntu3_armel.deb) ... Unpacking replacement ifupdown ... Preparing to replace upstart 1.4-0ubuntu1 (using .../upstart_1.4-0ubuntu2_armel.deb) ... Unpacking replacement upstart ... Preparing to replace libc6-dev 2.13-24ubuntu2 (using .../libc6-dev_2.13-24ubuntu4_armel.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.13-24ubuntu2 (using .../libc-dev-bin_2.13-24ubuntu4_armel.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace linux-libc-dev 3.2.0-7.13 (using .../linux-libc-dev_3.2.0-10.17_armel.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.6.2-10ubuntu1 (using .../libgomp1_4.6.2-12ubuntu1_armel.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.2-10ubuntu1 (using .../gcc-4.6-base_4.6.2-12ubuntu1_armel.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.2-12ubuntu1) ... (Reading database ... 14116 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.2-10ubuntu1 (using .../libgcc1_1%3a4.6.2-12ubuntu1_armel.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.2-12ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14116 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.2-10ubuntu1 (using .../cpp-4.6_4.6.2-12ubuntu1_armel.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libstdc++6-4.6-dev 4.6.2-10ubuntu1 (using .../libstdc++6-4.6-dev_4.6.2-12ubuntu1_armel.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.2-10ubuntu1 (using .../g++-4.6_4.6.2-12ubuntu1_armel.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.2-10ubuntu1 (using .../gcc-4.6_4.6.2-12ubuntu1_armel.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.2-10ubuntu1 (using .../libstdc++6_4.6.2-12ubuntu1_armel.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.2-12ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14116 files and directories currently installed.) Preparing to replace binutils 2.22-3ubuntu1 (using .../binutils_2.22-4ubuntu1_armel.deb) ... Unpacking replacement binutils ... Preparing to replace libc-bin 2.13-24ubuntu2 (using .../libc-bin_2.13-24ubuntu4_armel.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-24ubuntu4) ... Installing new version of config file /etc/bindresvport.blacklist ... (Reading database ... 14116 files and directories currently installed.) Preparing to replace libc6 2.13-24ubuntu2 (using .../libc6_2.13-24ubuntu4_armel.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.13-24ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14116 files and directories currently installed.) Preparing to replace libusb-0.1-4 2:0.1.12-19 (using .../libusb-0.1-4_2%3a0.1.12-20_armel.deb) ... Unpacking replacement libusb-0.1-4 ... Setting up libusb-0.1-4 (2:0.1.12-20) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14115 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.0e-2ubuntu4 (using .../libssl1.0.0_1.0.0e-3ubuntu1_armel.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.0e-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14115 files and directories currently installed.) Preparing to replace libdrm2 2.4.29-1ubuntu1 (using .../libdrm2_2.4.30-1ubuntu1_armel.deb) ... Unpacking replacement libdrm2 ... Preparing to replace libdrm-intel1 2.4.29-1ubuntu1 (using .../libdrm-intel1_2.4.30-1ubuntu1_armel.deb) ... Unpacking replacement libdrm-intel1 ... Preparing to replace libdrm-nouveau1a 2.4.29-1ubuntu1 (using .../libdrm-nouveau1a_2.4.30-1ubuntu1_armel.deb) ... Unpacking replacement libdrm-nouveau1a ... Preparing to replace libdrm-radeon1 2.4.29-1ubuntu1 (using .../libdrm-radeon1_2.4.30-1ubuntu1_armel.deb) ... Unpacking replacement libdrm-radeon1 ... Preparing to replace libglib2.0-0 2.31.6-0ubuntu1 (using .../libglib2.0-0_2.31.12-0ubuntu1_armel.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libp11-kit0 0.9-3 (using .../libp11-kit0_0.10-1_armel.deb) ... Unpacking replacement libp11-kit0 ... Preparing to replace libapt-pkg4.11 0.8.16~exp5ubuntu14.1 (using .../libapt-pkg4.11_0.8.16~exp5ubuntu14.2_armel.deb) ... Unpacking replacement libapt-pkg4.11 ... Setting up libapt-pkg4.11 (0.8.16~exp5ubuntu14.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14158 files and directories currently installed.) Preparing to replace apt 0.8.16~exp5ubuntu14.1 (using .../apt_0.8.16~exp5ubuntu14.2_armel.deb) ... Unpacking replacement apt ... Setting up apt (0.8.16~exp5ubuntu14.2) ... Installing new version of config file /etc/cron.daily/apt ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 14158 files and directories currently installed.) Preparing to replace multiarch-support 2.13-24ubuntu2 (using .../multiarch-support_2.13-24ubuntu4_armel.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-24ubuntu4) ... (Reading database ... 14158 files and directories currently installed.) Preparing to replace python2.7-minimal 2.7.2-9 (using .../python2.7-minimal_2.7.2-13ubuntu4_armel.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.2-13ubuntu4) ... (Reading database ... 14158 files and directories currently installed.) Preparing to replace apt-transport-https 0.8.16~exp5ubuntu14.1 (using .../apt-transport-https_0.8.16~exp5ubuntu14.2_armel.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace openssl 1.0.0e-2ubuntu4 (using .../openssl_1.0.0e-3ubuntu1_armel.deb) ... Unpacking replacement openssl ... Preparing to replace cpp 4:4.6.2-2ubuntu1 (using .../cpp_4%3a4.6.2-4ubuntu1_armel.deb) ... Unpacking replacement cpp ... Preparing to replace gcc 4:4.6.2-2ubuntu1 (using .../gcc_4%3a4.6.2-4ubuntu1_armel.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.6.2-2ubuntu1 (using .../g++_4%3a4.6.2-4ubuntu1_armel.deb) ... Unpacking replacement g++ ... Preparing to replace patch 2.6.1-2 (using .../patch_2.6.1-2.1_armel.deb) ... Unpacking replacement patch ... Preparing to replace pkgbinarymangler 111 (using .../pkgbinarymangler_113_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libdbus-1-3 (1.4.16-1ubuntu4) ... Setting up libc-dev-bin (2.13-24ubuntu4) ... Setting up linux-libc-dev (3.2.0-10.17) ... Setting up libc6-dev (2.13-24ubuntu4) ... Setting up libgomp1 (4.6.2-12ubuntu1) ... Setting up cpp-4.6 (4.6.2-12ubuntu1) ... Setting up binutils (2.22-4ubuntu1) ... Setting up gcc-4.6 (4.6.2-12ubuntu1) ... Setting up libdrm2 (2.4.30-1ubuntu1) ... Setting up libdrm-intel1 (2.4.30-1ubuntu1) ... Setting up libdrm-nouveau1a (2.4.30-1ubuntu1) ... Setting up libdrm-radeon1 (2.4.30-1ubuntu1) ... Setting up libglib2.0-0 (2.31.12-0ubuntu1) ... No schema files found: doing nothing. Setting up libp11-kit0 (0.10-1) ... Setting up apt-transport-https (0.8.16~exp5ubuntu14.2) ... Setting up openssl (1.0.0e-3ubuntu1) ... Setting up cpp (4:4.6.2-4ubuntu1) ... Setting up gcc (4:4.6.2-4ubuntu1) ... Setting up patch (2.6.1-2.1) ... Setting up pkgbinarymangler (113) ... Setting up libstdc++6-4.6-dev (4.6.2-12ubuntu1) ... Setting up g++-4.6 (4.6.2-12ubuntu1) ... Setting up g++ (4:4.6.2-4ubuntu1) ... Setting up ifupdown (0.7~beta2ubuntu3) ... Installing new version of config file /etc/init/network-interface-security.conf ... Installing new version of config file /etc/init/networking.conf ... Installing new version of config file /etc/init/network-interface.conf ... Setting up upstart (1.4-0ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa', 'armel', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=armel', '--comp=universe', 'exonerate_2.2.0-6.dsc'] Initiating build 8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa with 0 processor cores. Automatic build of exonerate_2.2.0-6 on hubbard by sbuild/armel 1.170.5 Build started at 20120124-0300 ****************************************************************************** exonerate_2.2.0-6.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8), autotools-dev, libglib2.0-dev, libreadline-dev, dh-autoreconf Checking for already installed source dependencies... debhelper: missing autotools-dev: missing libglib2.0-dev: missing libreadline-dev: missing dh-autoreconf: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev libglib2.0-dev libreadline-dev dh-autoreconf Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake bsdmainutils file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libglib2.0-bin libglib2.0-data libmagic1 libpcre3-dev libpcrecpp0 libpipeline1 libpopt0 libreadline6-dev libtinfo-dev libtool libunistring0 libxml2 m4 man-db pkg-config po-debconf zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff libglib2.0-doc libtool-doc automaken gfortran fortran95-compiler gcj less www-browser libmail-box-perl Recommended packages: autopoint curl wget lynx-cur python libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper dh-autoreconf file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libglib2.0-bin libglib2.0-data libglib2.0-dev libmagic1 libpcre3-dev libpcrecpp0 libpipeline1 libpopt0 libreadline-dev libreadline6-dev libtinfo-dev libtool libunistring0 libxml2 m4 man-db pkg-config po-debconf zlib1g-dev 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 9292 kB of archives. After this operation, 31.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpopt0 libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 libpcrecpp0 libmagic1 file bsdmainutils gettext-base groff-base man-db m4 autoconf autotools-dev automake html2text gettext intltool-debian po-debconf debhelper libtool dh-autoreconf libglib2.0-data libglib2.0-bin libpcre3-dev pkg-config zlib1g-dev libglib2.0-dev libtinfo-dev libreadline6-dev libreadline-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libpopt0 armel 1.16-3ubuntu1 [26.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 armel 1.2.0-5 [20.7 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libxml2 armel 2.7.8.dfsg-5.1ubuntu3 [548 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 armel 0.6.2-2 [81.1 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 armel 0.9.3-5 [394 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 armel 0.18.1.1-5ubuntu3 [99.4 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libpcrecpp0 armel 8.12-4 [13.2 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 armel 5.09-2 [213 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main file armel 5.09-2 [18.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils armel 8.2.3 [194 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main gettext-base armel 0.18.1.1-5ubuntu3 [54.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main groff-base armel 1.21-6 [934 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main man-db armel 2.6.0.2-3 [671 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main m4 armel 1.4.16-2ubuntu1 [182 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main autoconf armel 2.68-1ubuntu2 [560 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main autotools-dev all 20110511.1 [44.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main automake armel 1:1.11.1-1ubuntu2 [544 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main html2text armel 1.3.2a-15 [94.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main gettext armel 0.18.1.1-5ubuntu3 [1050 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main po-debconf armel 1.0.16+nmu1ubuntu1 [211 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main debhelper armel 9.20120115ubuntu2 [618 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libtool armel 2.4.2-1ubuntu1 [302 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main dh-autoreconf all 5 [14.6 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-data armel 2.31.12-0ubuntu1 [83.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-bin armel 2.31.12-0ubuntu1 [29.1 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libpcre3-dev armel 8.12-4 [218 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main pkg-config armel 0.26-1ubuntu1 [38.0 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev armel 1:1.2.3.4.dfsg-3ubuntu4 [159 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-dev armel 2.31.12-0ubuntu1 [1531 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libtinfo-dev armel 5.9-4 [84.1 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libreadline6-dev armel 6.2-8 [229 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libreadline-dev armel 6.2-8 [932 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 9292 kB in 6s (1463 kB/s) Selecting previously unselected package libpopt0. (Reading database ... 14158 files and directories currently installed.) Unpacking libpopt0 (from .../libpopt0_1.16-3ubuntu1_armel.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_armel.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu3_armel.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-2_armel.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_armel.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_armel.deb) ... Selecting previously unselected package libpcrecpp0. Unpacking libpcrecpp0 (from .../libpcrecpp0_8.12-4_armel.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-2_armel.deb) ... 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Selecting previously unselected package libreadline-dev. Unpacking libreadline-dev (from .../libreadline-dev_6.2-8_armel.deb) ... Processing triggers for libglib2.0-0 ... No schema files found: doing nothing. Setting up libpopt0 (1.16-3ubuntu1) ... Setting up libpipeline1 (1.2.0-5) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu3) ... Setting up libcroco3 (0.6.2-2) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up libpcrecpp0 (8.12-4) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up m4 (1.4.16-2ubuntu1) ... Setting up autoconf (2.68-1ubuntu2) ... Setting up autotools-dev (20110511.1) ... Setting up automake (1:1.11.1-1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1ubuntu1) ... Setting up debhelper (9.20120115ubuntu2) ... Setting up libtool (2.4.2-1ubuntu1) ... Setting up dh-autoreconf (5) ... Setting up libglib2.0-data (2.31.12-0ubuntu1) ... Setting up libglib2.0-bin (2.31.12-0ubuntu1) ... Setting up libpcre3-dev (8.12-4) ... Setting up pkg-config (0.26-1ubuntu1) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Setting up libglib2.0-dev (2.31.12-0ubuntu1) ... Setting up libtinfo-dev (5.9-4) ... Setting up libreadline6-dev (6.2-8) ... Setting up libreadline-dev (6.2-8) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-24ubuntu4 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu5 gcc-4.6_4.6.2-12ubuntu1 g++-4.6_4.6.2-12ubuntu1 binutils_2.22-4ubuntu1 libstdc++6-4.6-dev_4.6.2-12ubuntu1 libstdc++6_4.6.2-12ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Thu Jan 12 10:56:31 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./exonerate_2.2.0-6.dsc dpkg-source: info: extracting exonerate in exonerate-2.2.0 dpkg-source: info: unpacking exonerate_2.2.0.orig.tar.gz dpkg-source: info: unpacking exonerate_2.2.0-6.debian.tar.gz dpkg-source: info: applying fix_build-as-needed.patch dpkg-source: info: applying manpages.patch dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package exonerate dpkg-buildpackage: source version 2.2.0-6 dpkg-source --before-build exonerate-2.2.0 dpkg-buildpackage: host architecture armel /usr/bin/fakeroot debian/rules clean dh clean --with autoreconf dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/exonerate-2.2.0' dh_auto_clean rm -rf codegen make[1]: Leaving directory `/build/buildd/exonerate-2.2.0' dh_autoreconf_clean dh_clean debian/rules build dh build --with autoreconf dh_testdir debian/rules override_dh_autoreconf make[1]: Entering directory `/build/buildd/exonerate-2.2.0' dh_autoreconf --as-needed src/bsdp/Makefile.am: installing `./depcomp' make[1]: Leaving directory `/build/buildd/exonerate-2.2.0' dh_auto_configure configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking whether make sets $(MAKE)... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking build system type... arm-unknown-linux-gnueabi checking host system type... arm-unknown-linux-gnueabi Set host to arm-unknown-linux-gnueabi arm-unknown-linux-gnueabi Set source_root_dir to /build/buildd/exonerate-2.2.0 ---------------------------------------------------------------- checking for socklen_t... yes checking for pkg-config... /usr/bin/pkg-config Using GLIB-2 Turning assertions off Turning paranoid options off Not using options for profiling with gprof Not using options for analysis with gcov Adding support for LARGE FILES (>2Gb) for a 32 bit system Using COMPILED C4 MODELS Installing UTILITIES Using PTHREADS ---------------------------------------------------------------- configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/man/Makefile config.status: creating doc/man/man1/Makefile config.status: creating src/Makefile config.status: creating src/general/Makefile config.status: creating src/sequence/Makefile config.status: creating src/database/Makefile config.status: creating src/struct/Makefile config.status: creating src/comparison/Makefile config.status: creating src/c4/Makefile config.status: creating src/bsdp/Makefile config.status: creating src/sdp/Makefile config.status: creating src/hub/Makefile config.status: creating src/model/Makefile config.status: creating src/program/Makefile config.status: creating src/util/Makefile config.status: creating test/Makefile config.status: creating test/util/Makefile config.status: creating test/ipcress/Makefile config.status: creating test/exonerate/Makefile config.status: creating test/data/Makefile config.status: creating test/data/cdna/Makefile config.status: creating test/data/protein/Makefile config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make[1]: Entering directory `/build/buildd/exonerate-2.2.0' Making all in doc make[2]: Entering directory `/build/buildd/exonerate-2.2.0/doc' Making all in man make[3]: Entering directory `/build/buildd/exonerate-2.2.0/doc/man' Making all in man1 make[4]: Entering directory `/build/buildd/exonerate-2.2.0/doc/man/man1' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/doc/man/man1' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/doc/man' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/doc/man' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/doc/man' make[3]: Entering directory `/build/buildd/exonerate-2.2.0/doc' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/doc' make[2]: Leaving directory `/build/buildd/exonerate-2.2.0/doc' Making all in src make[2]: Entering directory `/build/buildd/exonerate-2.2.0/src' Making all in struct make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/struct' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fsm.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fsm.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c recyclebin.c recyclebin.c: In function 'RecycleBin_profile': recyclebin.c:133:9: warning: 'g_tree_traverse' is deprecated (declared at /usr/include/glib-2.0/glib/gtree.h:77) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fsm.test fsm.test.o fsm.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c matrix.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c matrix.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o matrix.test matrix.test.o matrix.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c pqueue.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c pqueue.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o pqueue.test pqueue.test.o pqueue.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c slist.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c slist.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o slist.test slist.test.o slist.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c rangetree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c rangetree.c rangetree.c: In function 'RangeTree_insert_recent': rangetree.c:151:5: warning: 'g_tree_traverse' is deprecated (declared at /usr/include/glib-2.0/glib/gtree.h:77) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o rangetree.test rangetree.test.o rangetree.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c vfsm.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c vfsm.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o vfsm.test vfsm.test.o vfsm.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c recyclebin.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o recyclebin.test recyclebin.test.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c sparsecache.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c sparsecache.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o sparsecache.test sparsecache.test.o sparsecache.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c dejavu.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c dejavu.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o dejavu.test dejavu.test.o dejavu.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c bitarray.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c bitarray.c bitarray.c: In function 'BitArray_read_int': bitarray.c:189:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] bitarray.c: In function 'BitArray_read': bitarray.c:83:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o bitarray.test bitarray.test.o bitarray.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c splaytree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c splaytree.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o splaytree.test splaytree.test.o splaytree.o recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c noitree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c noitree.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o noitree.test noitree.test.o noitree.o recyclebin.o splaytree.o -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/struct' Making all in general make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/general' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c argument.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c argument.c argument.c: In function 'ArgumentParse_boolean': argument.c:138:9: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] argument.c:140:9: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] argument.c: In function 'Argument_process': argument.c:499:5: warning: 'g_tree_traverse' is deprecated (declared at /usr/include/glib-2.0/glib/gtree.h:77) [-Wdeprecated-declarations] argument.c:556:5: warning: 'g_tree_traverse' is deprecated (declared at /usr/include/glib-2.0/glib/gtree.h:77) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o argument.test argument.test.o argument.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c lineparse.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c lineparse.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o lineparse.test lineparse.test.o lineparse.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c compoundfile.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c compoundfile.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o compoundfile.test compoundfile.test.o compoundfile.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c socket.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c socket.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o socket.test socket.test.o socket.o -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/general' Making all in sequence make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/sequence' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c sequence.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c sequence.c sequence.c: In function 'Sequence_destroy_annotation_tree': sequence.c:97:5: warning: 'g_tree_traverse' is deprecated (declared at /usr/include/glib-2.0/glib/gtree.h:77) [-Wdeprecated-declarations] gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c alphabet.c alphabet.c: In function 'Alphabet_name_get_type': alphabet.c:316:9: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] alphabet.c:319:9: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] alphabet.c:322:9: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c translate.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c splice.c splice.c: In function 'SplicePredictor_parse_data': splice.c:146:17: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] splice.c: In function 'SplicePredictor_add_5SS_data': splice.c:195:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] splice.c: In function 'SplicePredictor_add_3SS_data': splice.c:203:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o sequence.test sequence.test.o sequence.o alphabet.o translate.o splice.o ../../src/struct/matrix.o ../../src/struct/sparsecache.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c submat.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c submat.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o submat.test submat.test.o submat.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c translate.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o translate.test translate.test.o translate.o ../../src/general/argument.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c splice.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o splice.test splice.test.o splice.o ../../src/struct/matrix.o ../../src/struct/sparsecache.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c alphabet.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o alphabet.test alphabet.test.o alphabet.o ../../src/general/argument.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c codonsubmat.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c codonsubmat.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o codonsubmat.test codonsubmat.test.o codonsubmat.o ../../src/general/argument.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/sequence' Making all in comparison make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/comparison' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c wordhood.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c wordhood.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o wordhood.test wordhood.test.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c hspset.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c hspset.c hspset.c: In function 'HSP_Display_insert': hspset.c:590:9: warning: 'g_strdown' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:179) [-Wdeprecated-declarations] hspset.c:591:9: warning: 'g_strdown' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:179) [-Wdeprecated-declarations] hspset.c:593:9: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] hspset.c:594:9: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c match.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o hspset.test hspset.test.o hspset.o match.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c pcr.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c pcr.c pcr.c: In function 'PCR_Match_allocate': pcr.c:31:9: warning: 'g_mem_chunk_alloc' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:52) [-Wdeprecated-declarations] pcr.c: In function 'PCR_Probe_create': pcr.c:59:5: warning: 'g_mem_chunk_alloc' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:52) [-Wdeprecated-declarations] pcr.c: In function 'PCR_Probe_destroy': pcr.c:69:5: warning: 'g_mem_chunk_free' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:56) [-Wdeprecated-declarations] pcr.c: In function 'PCR_Sensor_create': pcr.c:155:5: warning: 'g_mem_chunk_alloc' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:52) [-Wdeprecated-declarations] pcr.c: In function 'PCR_Sensor_destroy': pcr.c:174:5: warning: 'g_mem_chunk_free' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:56) [-Wdeprecated-declarations] pcr.c: In function 'PCR_Primer_create': pcr.c:252:5: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] pcr.c:253:5: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] pcr.c: In function 'PCR_create': pcr.c:357:5: warning: 'g_mem_chunk_new' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:45) [-Wdeprecated-declarations] pcr.c:363:5: warning: 'g_mem_chunk_new' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:45) [-Wdeprecated-declarations] pcr.c:366:5: warning: 'g_mem_chunk_new' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:45) [-Wdeprecated-declarations] pcr.c: In function 'PCR_destroy': pcr.c:381:5: warning: 'g_mem_chunk_destroy' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:50) [-Wdeprecated-declarations] pcr.c:383:5: warning: 'g_mem_chunk_destroy' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:50) [-Wdeprecated-declarations] pcr.c:384:5: warning: 'g_mem_chunk_destroy' is deprecated (declared at /usr/include/glib-2.0/glib/deprecated/gallocator.h:50) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o pcr.test pcr.test.o pcr.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/fsm.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c comparison.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c comparison.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o comparison.test comparison.test.o comparison.o hspset.o match.o wordhood.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/recyclebin.o ../../src/struct/pqueue.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c match.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o match.test match.test.o match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c seeder.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c seeder.c seeder.c: In function 'Seeder_decide_fsm_type': seeder.c:261:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] seeder.c:266:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] seeder.c:268:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o seeder.test seeder.test.o seeder.o wordhood.o hspset.o match.o comparison.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/recyclebin.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/comparison' Making all in database make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/database' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastadb.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastadb.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastadb.test fastadb.test.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastapipe.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastapipe.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastapipe.test fastapipe.test.o fastapipe.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c dataset.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c dataset.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o dataset.test dataset.test.o dataset.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/bitarray.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c index.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/struct -I../../src/general -I../../src/comparison -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c index.c index.c: In function 'Index_open': index.c:841:10: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o index.test index.test.o index.o fastadb.o dataset.o ../../src/general/compoundfile.o ../../src/struct/bitarray.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/struct/splaytree.o ../../src/struct/noitree.o ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/database' Making all in c4 make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/c4' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c region.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c region.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o region.test region.test.o region.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c c4.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c c4.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o c4.test c4.test.o c4.o region.o ../../src/struct/matrix.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c alignment.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c alignment.c alignment.c: In function 'AlignmentView_add_SPLICE_SITE': alignment.c:655:9: warning: 'g_strdown' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:179) [-Wdeprecated-declarations] alignment.c:662:9: warning: 'g_strdown' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:179) [-Wdeprecated-declarations] alignment.c:672:13: warning: 'g_strdown' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:179) [-Wdeprecated-declarations] alignment.c:685:9: warning: 'g_strdown' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:179) [-Wdeprecated-declarations] alignment.c: In function 'AlignmentView_add_SPLIT_CODON': alignment.c:982:5: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] alignment.c:983:5: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o alignment.test alignment.test.o alignment.o c4.o region.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c codegen.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c codegen.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o codegen.test codegen.test.o codegen.o ../../src/general/argument.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c optimal.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c optimal.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c layout.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c viterbi.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c subopt.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c cgutil.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o optimal.test optimal.test.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c layout.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o layout.test layout.test.o layout.o ../../src/struct/matrix.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c viterbi.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o viterbi.test viterbi.test.o viterbi.o c4.o region.o alignment.o codegen.o layout.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c opair.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c opair.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o opair.test opair.test.o opair.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c subopt.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o subopt.test subopt.test.o subopt.o region.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c cgutil.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o cgutil.test cgutil.test.o cgutil.o codegen.o c4.o region.o ../../src/general/argument.o ../../src/struct/matrix.o -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/c4' Making all in bsdp make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/bsdp' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c heuristic.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c heuristic.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o heuristic.test heuristic.test.o heuristic.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c bsdp.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c bsdp.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o bsdp.test bsdp.test.o bsdp.o ../../src/general/argument.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c hpair.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c hpair.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c sar.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o hpair.test hpair.test.o hpair.o heuristic.o bsdp.o sar.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/comparison/hspset.o ../../src/comparison/wordhood.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c sar.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o sar.test sar.test.o sar.o heuristic.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/bsdp' Making all in sdp make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/sdp' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c sdp.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c sdp.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c boundary.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c scheduler.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c lookahead.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c straceback.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o sdp.test sdp.test.o sdp.o boundary.o scheduler.o lookahead.o straceback.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/wordhood.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c lookahead.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o lookahead.test lookahead.test.o lookahead.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c boundary.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o boundary.test boundary.test.o boundary.o ../../src/general/argument.o ../../src/c4/region.o -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c scheduler.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o scheduler.test scheduler.test.o scheduler.o lookahead.o boundary.o straceback.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c straceback.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o straceback.test straceback.test.o straceback.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/sdp' Making all in model make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/model' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c edit_distance.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c edit_distance.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o edit_distance.test edit_distance.test.o edit_distance.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c affine.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c affine.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c ungapped.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o affine.test affine.test.o affine.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c protein2dna.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c protein2dna.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c frameshift.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o protein2dna.test protein2dna.test.o protein2dna.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c ner.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c ner.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o ner.test ner.test.o ner.o affine.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c est2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c est2genome.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c intron.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o est2genome.test est2genome.test.o est2genome.o affine.o ungapped.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c ungapped.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o ungapped.test ungapped.test.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c intron.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o intron.test intron.test.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c protein2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c protein2genome.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c phase.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o protein2genome.test protein2genome.test.o protein2genome.o protein2dna.o ungapped.o intron.o affine.o frameshift.o phase.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c coding2coding.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c coding2coding.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o coding2coding.test coding2coding.test.o coding2coding.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c frameshift.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o frameshift.test frameshift.test.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c coding2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c coding2genome.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o coding2genome.test coding2genome.test.o coding2genome.o coding2coding.o affine.o ungapped.o frameshift.o intron.o phase.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c cdna2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c cdna2genome.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o cdna2genome.test cdna2genome.test.o cdna2genome.o affine.o ungapped.o frameshift.o intron.o phase.o coding2coding.o coding2genome.o est2genome.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c genome2genome.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c genome2genome.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o genome2genome.test genome2genome.test.o genome2genome.o coding2coding.o affine.o ungapped.o frameshift.o intron.o phase.o coding2genome.o cdna2genome.o est2genome.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c phase.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o phase.test phase.test.o phase.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c modeltype.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c modeltype.c modeltype.c: In function 'Model_Type_from_string': modeltype.c:121:9: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] modeltype.c:124:9: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o modeltype.test modeltype.test.o modeltype.o ungapped.o affine.o est2genome.o ner.o protein2dna.o protein2genome.o coding2coding.o coding2genome.o genome2genome.o cdna2genome.o frameshift.o phase.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/sequence -I../../src/general -I../../src/comparison -I../../src/struct -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include \"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c bootstrapper.c bootstrapper.c: In function 'Argument_main': bootstrapper.c:421:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o bootstrapper bootstrapper.o modeltype.o ungapped.o affine.o est2genome.o ner.o protein2dna.o protein2genome.o coding2coding.o coding2genome.o genome2genome.o cdna2genome.o frameshift.o intron.o phase.o ../../src/struct/pqueue.o ../../src/comparison/comparison.o ../../src/comparison/hspset.o ../../src/comparison/wordhood.o ../../src/bsdp/heuristic.o ../../src/sdp/sdp.o ../../src/sdp/scheduler.o ../../src/sdp/straceback.o ../../src/sdp/lookahead.o ../../src/sdp/boundary.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/model' Making all in hub make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/hub' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c gam.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c gam.c gam.c: In function 'GAM_Refinement_from_string': gam.c:68:9: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gam.c: In function 'GAM_bestn_tree_destroy': gam.c:536:5: warning: 'g_tree_traverse' is deprecated (declared at /usr/include/glib-2.0/glib/gtree.h:77) [-Wdeprecated-declarations] gam.c: In function 'GAM_percent_threshold_tree_destroy': gam.c:549:5: warning: 'g_tree_traverse' is deprecated (declared at /usr/include/glib-2.0/glib/gtree.h:77) [-Wdeprecated-declarations] gam.c: In function 'GAM_report': gam.c:596:9: warning: 'g_tree_traverse' is deprecated (declared at /usr/include/glib-2.0/glib/gtree.h:77) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o gam.test gam.test.o gam.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/wordhood.o ../../src/struct/sparsecache.o ../../src/general/compoundfile.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/scheduler.o ../../src/sdp/straceback.o ../../src/sdp/lookahead.o ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c analysis.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c analysis.c analysis.c: In function 'Analysis_decide_scan_query': analysis.c:238:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] analysis.c:245:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] analysis.c:246:12: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] analysis.c:248:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] analysis.c:249:12: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c bsam.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o analysis.test analysis.test.o analysis.o gam.o bsam.o ../../src/comparison/hspset.o ../../src/comparison/wordhood.o ../../src/comparison/seeder.o ../../src/comparison/comparison.o ../../src/database/fastapipe.o ../../src/database/fastadb.o ../../src/struct/dejavu.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/sparsecache.o ../../src/general/compoundfile.o ../../src/general/socket.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/scheduler.o ../../src/sdp/straceback.o ../../src/sdp/lookahead.o ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c bsam.test.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o bsam.test bsam.test.o bsam.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/match.o ../../src/comparison/wordhood.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/sequence/splice.o ../../src/struct/dejavu.o ../../src/struct/pqueue.o ../../src/struct/sparsecache.o ../../src/struct/recyclebin.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/hub' Making all in program make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/program' ../../src/model/bootstrapper --compiled no ** Message: Starting building bootstrapping components ** Message: Processing model [u] ** Message: Bootstrapper processing model [ungapped:dna2dna] ** Message: Process optimal [optimal:ungapped:dna2dna] ** WARNING **: Creating codegen directory [/build/buildd/exonerate-2.2.0/codegen] ** WARNING **: Creating codegen directory [/build/buildd/exonerate-2.2.0/codegen] ** WARNING **: Creating codegen directory [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi] ** WARNING **: Creating codegen directory [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] to archive ar -cSq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [ungapped:protein2protein] ** Message: Process optimal [optimal:ungapped:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [ungapped:dna2protein] ** Message: Process optimal [optimal:ungapped:dna2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [ungapped:protein2dna] ** Message: Process optimal [optimal:ungapped:protein2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation] ** Message: Processing model [u:t] ** Message: Bootstrapper processing model [ungapped:codon] ** Message: Process optimal [optimal:ungapped:codon] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_score.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_region.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_ungapped_58_codon_32_find_32_path_32_continuation] ** Message: Processing model [a:g] ** Message: Bootstrapper processing model [affine:global:dna2dna] ** Message: Process optimal [optimal:affine:global:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [affine:global:protein2protein] ** Message: Process optimal [optimal:affine:global:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation] ** Message: Processing model [a:b] ** Message: Bootstrapper processing model [affine:bestfit:dna2dna] ** Message: Process optimal [optimal:affine:bestfit:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation] ** Message: Bootstrapper processing model [affine:bestfit:protein2protein] ** Message: Process optimal [optimal:affine:bestfit:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation] ** Message: Processing model [a:l] ** Message: Bootstrapper processing model [affine:local:dna2dna] ** Message: Process optimal [optimal:affine:local:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded] ** Message: Bootstrapper processing model [affine:local:protein2protein] ** Message: Process optimal [optimal:affine:local:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded] ** Message: Processing model [a:o] ** Message: Bootstrapper processing model [affine:overlap:dna2dna] ** Message: Process optimal [optimal:affine:overlap:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation] ** Message: Processing model [e2g] ** Message: Bootstrapper processing model [est2genome] ** Message: Process optimal [optimal:est2genome] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_score.o ** Message: Adding function [optimal_58_est2genome_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path.o ** Message: Adding function [optimal_58_est2genome_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_region.o ** Message: Adding function [optimal_58_est2genome_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_est2genome_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_est2genome_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_est2genome_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match reverse"->"END"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("START"->"match forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match forward"->"END"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match reverse"->"match reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match reverse"->"intron reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match reverse"->"intron reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron reverse"->"match reverse"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match forward"->"match forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match forward"->"intron forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match forward"->"intron forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron forward"->"match forward"):[est2genome]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary] ** Message: Processing model [ner] ** Message: Bootstrapper processing model [NER:affine:local:dna2dna] ** Message: Process optimal [optimal:NER:affine:local:dna2dna] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:dna2dna]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary] ** Message: Bootstrapper processing model [NER:affine:local:protein2protein] ** Message: Process optimal [optimal:NER:affine:local:protein2protein] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:protein2protein]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary] ** Message: Processing model [p2d] ** Message: Bootstrapper processing model [protein2dna:local] ** Message: Process optimal [optimal:protein2dna:local] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_score.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_region.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2dna_58_local_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[protein2dna:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[protein2dna:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2dna:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded] ** Message: Processing model [p2d:b] ** Message: Bootstrapper processing model [protein2dna:bestfit] ** Message: Process optimal [optimal:protein2dna:bestfit] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_score.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_region.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation] ** Message: Processing model [p2g] ** Message: Bootstrapper processing model [protein2genome:local] ** Message: Process optimal [optimal:protein2genome:local] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_score.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_region.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2genome_58_local_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron 0:0 phase-T"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron 1:2 phase-T"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Src span traceback [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Process optimal [Dst span [Segment("intron 2:1 phase-T"->"match"):[protein2genome:local]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o ** Message: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary] ** Message: Processing model [p2g:b] ** Message: Bootstrapper processing model [protein2genome:bestfit] ** Message: Process optimal [optimal:protein2genome:bestfit] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_score.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_region.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation] ** Message: Processing model [c2c] ** Message: Bootstrapper processing model [coding2coding] ** Message: Process optimal [optimal:coding2coding] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_score.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_region.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2coding_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_coding2coding_32_find_32_path_32_continuation] ** Message: Process optimal [Terminal [Segment("START"->"match"):[coding2coding]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: Process optimal [Terminal [Segment("match"->"END"):[coding2coding]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: Process optimal [HeuristicJoin:[Segment("match"->"match"):[coding2coding]]] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o ** Message: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o ** Message: Adding function [Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded] ** Message: Processing model [c2g] ** Message: Bootstrapper processing model [coding2genome] ** Message: Process optimal [optimal:coding2genome] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_score.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_region.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_coding2genome_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_coding2genome_32_find_32_path_32_continuation] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary] ** Message: Processing model [cd2g] ** Message: Bootstrapper processing model [cdna2genome] ** Message: Process optimal [optimal:cdna2genome] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_score.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_score.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_region.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_region.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_checkpoint.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_checkpoint.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path_32_continuation.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path_32_continuation.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_score.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_score.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_score] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_path] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_region.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_region.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_region] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_checkpoint.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_checkpoint.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_checkpoint] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/optimal_58_cdna2genome_32_find_32_path_32_continuation.o ** Message: Adding function [optimal_58_cdna2genome_32_find_32_path_32_continuation] ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c ** Message: Compiling codegen: gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/struct -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -I/build/buildd/exonerate-2.2.0/src/model -I/build/buildd/exonerate-2.2.0/src/comparison -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/bsdp -I/build/buildd/exonerate-2.2.0/src/sdp -o /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o -c /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.c ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary] ** Message: Adding: [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] ** Message: Adding object file [/build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/buildd/exonerate-2.2.0/codegen/arm_45_unknown_45_linux_45_gnueabi/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o ** Message: Adding function [Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary] ** Message: Compiling with: [gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/buildd/exonerate-2.2.0/src/c4 -I/build/buildd/exonerate-2.2.0/src/sequence -I/build/buildd/exonerate-2.2.0/src/general -I/build/buildd/exonerate-2.2.0/src/struct -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -o c4_model_lookup.o -c c4_model_lookup.c] ** Message: Adding: [c4_model_lookup.o] ** Message: Adding object file [c4_model_lookup.o] to archive ar -Sq c4_model_archive.a c4_model_lookup.o ** Message: Indexing archive [c4_model_archive.a] ranlib c4_model_archive.a ** Message: Done ** Message: Finished building bootstrapping components make all-am make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/program' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c exonerate.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -I. \ -DUSE_COMPILED_MODELS \ -c ../../src/c4/viterbi.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -I. \ -DUSE_COMPILED_MODELS \ -c ../../src/sdp/scheduler.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o exonerate exonerate.o viterbi.o scheduler.o c4_model_archive.a ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/seeder.o ../../src/comparison/comparison.o ../../src/database/fastapipe.o ../../src/database/fastadb.o ../../src/struct/dejavu.o ../../src/struct/fsm.o ../../src/struct/vfsm.o ../../src/struct/sparsecache.o ../../src/hub/gam.o ../../src/hub/bsam.o ../../src/hub/analysis.o ../../src/general/compoundfile.o ../../src/c4/c4.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/opair.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/layout.o ../../src/c4/region.o ../../src/c4/subopt.o ../../src/bsdp/bsdp.o ../../src/bsdp/sar.o ../../src/bsdp/heuristic.o ../../src/bsdp/hpair.o ../../src/sdp/boundary.o ../../src/sdp/sdp.o ../../src/sdp/lookahead.o ../../src/sdp/straceback.o ../../src/struct/matrix.o ../../src/struct/slist.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/model/affine.o ../../src/model/est2genome.o ../../src/model/ner.o ../../src/model/protein2dna.o ../../src/model/protein2genome.o ../../src/model/coding2coding.o ../../src/model/coding2genome.o ../../src/model/cdna2genome.o ../../src/model/genome2genome.o ../../src/model/ungapped.o ../../src/model/intron.o ../../src/model/frameshift.o ../../src/model/phase.o ../../src/model/modeltype.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/socket.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c ipcress.c ipcress.c: In function 'Ipcress_prepare_PCR': ipcress.c:264:9: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] ipcress.c:265:9: warning: 'g_strup' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:181) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o ipcress ipcress.o ../../src/comparison/pcr.o ../../src/comparison/wordhood.o ../../src/database/fastadb.o ../../src/sequence/alphabet.o ../../src/sequence/sequence.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/fsm.o ../../src/struct/slist.o ../../src/struct/matrix.o ../../src/struct/recyclebin.o ../../src/struct/sparsecache.o ../../src/general/lineparse.o ../../src/general/argument.o ../../src/general/compoundfile.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"arm-unknown-linux-gnueabi\"" -DSOURCE_ROOT_DIR="\"/build/buildd/exonerate-2.2.0\"" -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c exonerate-server.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o exonerate-server exonerate-server.o ../../src/general/socket.o ../../src/general/argument.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/comparison/wordhood.o ../../src/database/dataset.o ../../src/database/index.o ../../src/database/fastadb.o ../../src/struct/bitarray.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/struct/splaytree.o ../../src/struct/noitree.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/translate.o ../../src/sequence/splice.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/general/compoundfile.o ../../src/general/lineparse.o -lm -lglib-2.0 -lpthread make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/program' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/program' Making all in util make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/util' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastaclean.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaclean fastaclean.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastaclip.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaclip fastaclip.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastachecksum.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastachecksum fastachecksum.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastacomposition.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastacomposition fastacomposition.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastadiff.c fastadiff.c: In function 'fasta_diff': fastadiff.c:70:13: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastadiff fastadiff.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastaexplode.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaexplode fastaexplode.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastafetch.c fastafetch.c: In function 'get_query_list': fastafetch.c:121:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastafetch fastafetch.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastahardmask.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastahardmask fastahardmask.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastaindex.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaindex fastaindex.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastalength.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastalength fastalength.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastanrdb.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastanrdb fastanrdb.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastaoverlap.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaoverlap fastaoverlap.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastareformat.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastareformat fastareformat.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastaremove.c fastaremove.c: In function 'Argument_main': fastaremove.c:73:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaremove fastaremove.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastarevcomp.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastarevcomp fastarevcomp.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastasoftmask.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastasoftmask fastasoftmask.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastasort.c fastasort.c: In function 'SortKey_Mask_create': fastasort.c:130:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] fastasort.c:132:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] fastasort.c:134:5: warning: 'g_strcasecmp' is deprecated (declared at /usr/include/glib-2.0/glib/gstrfuncs.h:172) [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastasort fastasort.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastasplit.c fastasplit.c: In function 'Argument_main': fastasplit.c:92:13: warning: 'g_basename' is deprecated (declared at /usr/include/glib-2.0/glib/gfileutils.h:159): Use 'g_path_get_basename' instead [-Wdeprecated-declarations] gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastasplit fastasplit.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastasubseq.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastasubseq fastasubseq.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastatranslate.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastatranslate fastatranslate.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastavalidcds.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastavalidcds fastavalidcds.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fasta2esd.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fasta2esd fasta2esd.o ../../src/database/dataset.o ../../src/struct/bitarray.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c fastaannotatecdna.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastaannotatecdna fastaannotatecdna.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.2.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c esd2esi.c gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabi/glib-2.0/include -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-Bsymbolic-functions -Wl,-z,relro -o esd2esi esd2esi.o ../../src/database/dataset.o ../../src/database/index.o ../../src/struct/bitarray.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/struct/noitree.o ../../src/struct/splaytree.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 -lpthread make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/util' make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src' make[2]: Leaving directory `/build/buildd/exonerate-2.2.0/src' Making all in test make[2]: Entering directory `/build/buildd/exonerate-2.2.0/test' Making all in data make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/data' Making all in cdna make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/data/cdna' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data/cdna' Making all in protein make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/data/protein' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data/protein' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/data' make[4]: Nothing to be done for `all-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data' Making all in exonerate make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/exonerate' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/exonerate' Making all in ipcress make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/ipcress' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/ipcress' Making all in util make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/util' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/util' make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test' make[2]: Leaving directory `/build/buildd/exonerate-2.2.0/test' make[2]: Entering directory `/build/buildd/exonerate-2.2.0' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/exonerate-2.2.0' make[1]: Leaving directory `/build/buildd/exonerate-2.2.0' debian/rules override_dh_auto_test make[1]: Entering directory `/build/buildd/exonerate-2.2.0' /usr/bin/make -C test check make[2]: Entering directory `/build/buildd/exonerate-2.2.0/test' Making check in data make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/data' Making check in cdna make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/data/cdna' make[4]: Nothing to be done for `check'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data/cdna' Making check in protein make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/data/protein' make[4]: Nothing to be done for `check'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data/protein' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/data' make[4]: Nothing to be done for `check-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data' Making check in exonerate make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/exonerate' /usr/bin/make check-TESTS make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/exonerate' Exonerate simple test OK Score as expected: 10875 PASS: exonerate.simple.test.sh ============= 1 test passed ============= make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/exonerate' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/exonerate' Making check in ipcress make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/ipcress' /usr/bin/make check-TESTS make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/ipcress' ** Message: Loaded [1] experiments Ipcress run successfully Found 1 product, as expected PASS: ipcress.simple.test.sh ============= 1 test passed ============= make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/ipcress' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/ipcress' Making check in util make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/util' /usr/bin/make check-TESTS make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/util' >CALM_HUMAN:filter(clean) MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE EFVQMMTAK PASS: fastaclean.test.sh Clipped OK >test:subseq(0,4) ACGT Clipped input correctly PASS: fastaclip.test.sh Calmodulin cDNA composition correct PASS: fastacomposition.test.sh fastadiff: id mismatch: CALM_HUMAN P53_HUMAN Different seqs recognised as different Identity test OK PASS: fastadiff.test.sh Made input file for fastaexplode Make output directory for fastaexplode Successfully ran fastaexplode on: fastaexplode.test.fasta Expected number of seqs in output: 4 PASS: fastaexpode.test.sh Made index fastafetch.test.idx ../../src/util/fastafetch fastafetch.test.fasta fastafetch.test.idx CALM_HUMAN expect 0 >CALM_HUMAN MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE EFVQMMTAK ../../src/util/fastafetch fastafetch.test.fasta fastafetch.test.idx P53_HUMAN expect 0 >P53_HUMAN MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAA PPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKT CPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRN TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVHVCACPGR DRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALEL KDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD ../../src/util/fastafetch fastafetch.test.fasta fastafetch.test.idx A_MISSING_FROM_START expect 1 ** FATAL ERROR **: Could not find identifier [A_MISSING_FROM_START] (missing -F ?) exiting ... ../../src/util/fastafetch fastafetch.test.fasta fastafetch.test.idx M_MISSING_FROM_MIDDLE expect 1 ** FATAL ERROR **: Could not find identifier [M_MISSING_FROM_MIDDLE] (missing -F ?) exiting ... ../../src/util/fastafetch fastafetch.test.fasta fastafetch.test.idx z_MISSING_FROM_END expect 1 ** FATAL ERROR **: Could not find identifier [z_MISSING_FROM_END] (missing -F ?) exiting ... fastaindex fastafetch test OK PASS: fastaindex.fastafetch.test.sh 149 CALM_HUMAN Calmodulin length OK Calmodulin identifier OK PASS: fastalength.test.sh Made input file for fastanrdb Successfully ran fastanrdb on: fastanrdb.input.test.fasta Expected number of seqs in output: 4 PASS: fastanrdb.test.sh ../../src/util/fastaoverlap working OK Generated 15 PASS: fastaoverlap.test.sh Reformatted OK >test ACGTAACCGGTTAAACCCGGGTTTAAAACCCCGGGGTTTT Reformatted length consistent PASS: fastarefomat.test.sh Have calmodulin in input ** FATAL ERROR **: Could not open list for removal [CALM_HUMAN] exiting ... Calmodulin successfully removed PASS: fastaremove.test.sh Reverse complement created : ../data/cdna/calm.human.dna.fasta Reverse complement created : fastarevcomp.rc.test.fasta RC length is the same RC length is the same 2nd reverse complement same as original PASS: fastarevcomp.test.sh Softmasked OK >test ACGNAACCGGNNAAACCCGGGNNNAAAACCCCGGGGNNNN Hardmasked OK Hardmasked file is same as original masked file PASS: fastasoftmask.fastahardmask.test.sh Sorted CALM_HUMAN 149 Sorted P53_HUMAN 393 Sorted TUBE_DROME 462 Sorted AF01595 1132 PASS: fastasort.test.sh Split fastasplit.test.fasta OK Split into two files as expected Input len 2136 Output len 2136 Input and output lengths match PASS: fastasplit.test.sh Generated correct subseq PASS: fastasubseq.test.sh Extraced CDS for translation Tranlated sequence Tranlsated sequence correct PASS: fastatranslate.test.sh ** WARNING **: odd_length length (7) not divisible by 3 ** WARNING **: too_short length (4) not divisible by 3 ** WARNING **: no_start missing start codon (has:AAA) ** WARNING **: no_end missing stop codon (has:TTT) ** WARNING **: in_frame_stop contains in-frame stop codon (pos:9, codon:TAG) ** WARNING **: non_acgt_base contains non-ACGT base: [pos: 5 base: N] Validiated CDS sequences OK >valid_seq ATGAAACCCGGGTTTTAA Validated correctly a single seq from input PASS: fastavalidcds.test.sh =================== All 18 tests passed =================== make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/util' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/util' make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test' make[2]: Leaving directory `/build/buildd/exonerate-2.2.0/test' make[1]: Leaving directory `/build/buildd/exonerate-2.2.0' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with autoreconf dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a make[1]: Entering directory `/build/buildd/exonerate-2.2.0' Making install in doc make[2]: Entering directory `/build/buildd/exonerate-2.2.0/doc' Making install in man make[3]: Entering directory `/build/buildd/exonerate-2.2.0/doc/man' Making install in man1 make[4]: Entering directory `/build/buildd/exonerate-2.2.0/doc/man/man1' make[5]: Entering directory `/build/buildd/exonerate-2.2.0/doc/man/man1' make[5]: Nothing to be done for `install-exec-am'. test -z "/usr/share/man/man1" || /bin/mkdir -p "/build/buildd/exonerate-2.2.0/debian/exonerate/usr/share/man/man1" /usr/bin/install -c -m 644 exonerate.1 ipcress.1 exonerate-server.1 fastautils.1 '/build/buildd/exonerate-2.2.0/debian/exonerate/usr/share/man/man1' make[5]: Leaving directory `/build/buildd/exonerate-2.2.0/doc/man/man1' make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/doc/man/man1' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/doc/man' make[5]: Entering directory `/build/buildd/exonerate-2.2.0/doc/man' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/exonerate-2.2.0/doc/man' make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/doc/man' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/doc/man' make[3]: Entering directory `/build/buildd/exonerate-2.2.0/doc' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/doc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/doc' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/doc' make[2]: Leaving directory `/build/buildd/exonerate-2.2.0/doc' Making install in src make[2]: Entering directory `/build/buildd/exonerate-2.2.0/src' Making install in struct make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/struct' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/struct' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/struct' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/struct' Making install in general make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/general' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/general' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/general' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/general' Making install in sequence make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/sequence' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/sequence' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/sequence' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/sequence' Making install in comparison make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/comparison' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/comparison' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/comparison' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/comparison' Making install in database make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/database' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/database' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/database' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/database' Making install in c4 make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/c4' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/c4' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/c4' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/c4' Making install in bsdp make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/bsdp' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/bsdp' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/bsdp' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/bsdp' Making install in sdp make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/sdp' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/sdp' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/sdp' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/sdp' Making install in model make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/model' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/model' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/model' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/model' Making install in hub make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/hub' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/hub' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/hub' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/hub' Making install in program make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/program' make install-am make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/program' make[5]: Entering directory `/build/buildd/exonerate-2.2.0/src/program' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/exonerate-2.2.0/debian/exonerate/usr/bin" /usr/bin/install -c exonerate ipcress exonerate-server '/build/buildd/exonerate-2.2.0/debian/exonerate/usr/bin' make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/exonerate-2.2.0/src/program' make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/program' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/program' Making install in util make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src/util' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src/util' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/exonerate-2.2.0/debian/exonerate/usr/bin" /usr/bin/install -c fastaclean fastaclip fastachecksum fastacomposition fastadiff fastaexplode fastafetch fastahardmask fastaindex fastalength fastanrdb fastaoverlap fastareformat fastaremove fastarevcomp fastasoftmask fastasort fastasplit fastasubseq fastatranslate fastavalidcds fasta2esd fastaannotatecdna esd2esi '/build/buildd/exonerate-2.2.0/debian/exonerate/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src/util' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src/util' make[3]: Entering directory `/build/buildd/exonerate-2.2.0/src' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/src' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/src' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/src' make[2]: Leaving directory `/build/buildd/exonerate-2.2.0/src' Making install in test make[2]: Entering directory `/build/buildd/exonerate-2.2.0/test' Making install in data make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/data' Making install in cdna make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/data/cdna' make[5]: Entering directory `/build/buildd/exonerate-2.2.0/test/data/cdna' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data/cdna' make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data/cdna' Making install in protein make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/data/protein' make[5]: Entering directory `/build/buildd/exonerate-2.2.0/test/data/protein' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data/protein' make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data/protein' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/data' make[5]: Entering directory `/build/buildd/exonerate-2.2.0/test/data' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data' make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/data' Making install in exonerate make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/exonerate' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/exonerate' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/exonerate' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/exonerate' Making install in ipcress make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/ipcress' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/ipcress' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/ipcress' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/ipcress' Making install in util make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test/util' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test/util' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test/util' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test/util' make[3]: Entering directory `/build/buildd/exonerate-2.2.0/test' make[4]: Entering directory `/build/buildd/exonerate-2.2.0/test' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/exonerate-2.2.0/test' make[3]: Leaving directory `/build/buildd/exonerate-2.2.0/test' make[2]: Leaving directory `/build/buildd/exonerate-2.2.0/test' make[2]: Entering directory `/build/buildd/exonerate-2.2.0' make[3]: Entering directory `/build/buildd/exonerate-2.2.0' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/exonerate-2.2.0' make[2]: Leaving directory `/build/buildd/exonerate-2.2.0' make[1]: Leaving directory `/build/buildd/exonerate-2.2.0' dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/exonerate-2.2.0' dh_installchangelogs -k ChangeLog make[1]: Leaving directory `/build/buildd/exonerate-2.2.0' dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform armel: exonerate dh_strip debug symbol extraction: packages to act on: exonerate dh_strip debug symbol extraction: ignored packages: dpkg-deb: building package `exonerate-dbgsym' in `../exonerate-dbgsym_2.2.0-6_armel.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 113 pkgstriptranslations: processing exonerate (in debian/exonerate); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/exonerate/DEBIAN/control, package exonerate, directory debian/exonerate .. removing usr/share/doc/exonerate/changelog.gz pkgstripfiles: PNG optimization for package exonerate took 0 s dpkg-deb: warning: 'debian/exonerate/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `exonerate' in `../exonerate_2.2.0-6_armel.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../exonerate_2.2.0-6_armel.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build exonerate-2.2.0 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120124-0608 Publishing debug debs. chroot-autobuild/build/buildd/exonerate_2.2.0-6_armel.deb: new debian package, version 2.0. size 3244324 bytes: control archive= 1985 bytes. 1201 bytes, 26 lines control 2233 bytes, 38 lines md5sums Package: exonerate Version: 2.2.0-6 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6064 Depends: libc6 (>= 2.7), libgcc1 (>= 1:4.4.0), libglib2.0-0 (>= 2.24.0) Suggests: wise Enhances: bioperl-run Section: science Priority: optional Homepage: http://www.ebi.ac.uk/~guy/exonerate/ Description: generic tool for pairwise sequence comparison Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general. . An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate. . This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb chroot-autobuild/build/buildd/exonerate_2.2.0-6_armel.deb: drwxr-xr-x root/root 0 2012-01-24 06:06 ./ drwxr-xr-x root/root 0 2012-01-24 06:06 ./usr/ drwxr-xr-x root/root 0 2012-01-24 06:06 ./usr/share/ drwxr-xr-x root/root 0 2012-01-24 06:06 ./usr/share/man/ drwxr-xr-x root/root 0 2012-01-24 06:06 ./usr/share/man/man1/ -rw-r--r-- root/root 2568 2012-01-24 06:06 ./usr/share/man/man1/ipcress.1.gz -rw-r--r-- root/root 1025 2012-01-24 06:06 ./usr/share/man/man1/fastaoverlap.1.gz -rw-r--r-- root/root 3895 2012-01-24 06:06 ./usr/share/man/man1/exonerate-server.1.gz -rw-r--r-- root/root 740 2012-01-24 06:06 ./usr/share/man/man1/fastautils.1.gz -rw-r--r-- root/root 12468 2012-01-24 06:06 ./usr/share/man/man1/exonerate.1.gz drwxr-xr-x root/root 0 2012-01-24 06:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-01-24 06:08 ./usr/share/doc/exonerate/ -rw-r--r-- root/root 552 2008-11-17 06:38 ./usr/share/doc/exonerate/README.Debian -rw-r--r-- root/root 1758 2012-01-12 10:30 ./usr/share/doc/exonerate/changelog.Debian.gz -rw-r--r-- root/root 1697 2011-12-12 12:17 ./usr/share/doc/exonerate/copyright -rw-r--r-- root/root 568 2008-07-10 11:35 ./usr/share/doc/exonerate/AUTHORS -rw-r--r-- root/root 3603 2008-02-08 19:46 ./usr/share/doc/exonerate/README.gz -rw-r--r-- root/root 4001 2006-02-06 12:01 ./usr/share/doc/exonerate/TODO.gz drwxr-xr-x root/root 0 2012-01-24 06:07 ./usr/bin/ -rwxr-xr-x root/root 54996 2012-01-24 06:07 ./usr/bin/fastaclean -rwxr-xr-x root/root 55008 2012-01-24 06:07 ./usr/bin/fastasplit -rwxr-xr-x root/root 55000 2012-01-24 06:07 ./usr/bin/fastarevcomp -rwxr-xr-x root/root 55000 2012-01-24 06:07 ./usr/bin/fastavalidcds -rwxr-xr-x root/root 55000 2012-01-24 06:07 ./usr/bin/fastasoftmask -rwxr-xr-x root/root 151172 2012-01-24 06:07 ./usr/bin/exonerate-server -rwxr-xr-x root/root 55000 2012-01-24 06:07 ./usr/bin/fastahardmask -rwxr-xr-x root/root 63208 2012-01-24 06:07 ./usr/bin/fasta2esd -rwxr-xr-x root/root 59104 2012-01-24 06:07 ./usr/bin/fastafetch -rwxr-xr-x root/root 55000 2012-01-24 06:07 ./usr/bin/fastachecksum -rwxr-xr-x root/root 138784 2012-01-24 06:07 ./usr/bin/esd2esi -rwxr-xr-x root/root 55004 2012-01-24 06:07 ./usr/bin/fastaexplode -rwxr-xr-x root/root 105992 2012-01-24 06:07 ./usr/bin/ipcress -rwxr-xr-x root/root 55000 2012-01-24 06:07 ./usr/bin/fastatranslate -rwxr-xr-x root/root 54996 2012-01-24 06:07 ./usr/bin/fastaclip -rwxr-xr-x root/root 54996 2012-01-24 06:07 ./usr/bin/fastaindex -rwxr-xr-x root/root 55008 2012-01-24 06:07 ./usr/bin/fastacomposition -rwxr-xr-x root/root 55000 2012-01-24 06:07 ./usr/bin/fastareformat -rwxr-xr-x root/root 55008 2012-01-24 06:07 ./usr/bin/fastaremove -rwxr-xr-x root/root 54996 2012-01-24 06:07 ./usr/bin/fastadiff -rwxr-xr-x root/root 59092 2012-01-24 06:07 ./usr/bin/fastasort -rwxr-xr-x root/root 59096 2012-01-24 06:07 ./usr/bin/fastanrdb -rwxr-xr-x root/root 55008 2012-01-24 06:07 ./usr/bin/fastaannotatecdna -rwxr-xr-x root/root 55000 2012-01-24 06:07 ./usr/bin/fastaoverlap -rwxr-xr-x root/root 54996 2012-01-24 06:07 ./usr/bin/fastalength -rwxr-xr-x root/root 4452060 2012-01-24 06:07 ./usr/bin/exonerate -rwxr-xr-x root/root 54996 2012-01-24 06:07 ./usr/bin/fastasubseq lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastaclip.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/exonerate-client.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastahardmask.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastasoftmask.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastachecksum.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastalength.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastareformat.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastasort.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastanrdb.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastaindex.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastaremove.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fasta2esd.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastacomposition.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastaexplode.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastafetch.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastasplit.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastadiff.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastasubseq.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastaclean.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastatranslate.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastaannotatecdna.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastarevcomp.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/man/man1/fastavalidcds.1.gz -> fastaoverlap.1.gz lrwxrwxrwx root/root 0 2012-01-24 06:06 ./usr/share/doc/exonerate/ChangeLog.gz -> changelog.gz exonerate_2.2.0-6_armel.changes: Format: 1.8 Date: Thu, 12 Jan 2012 11:29:32 +0100 Source: exonerate Binary: exonerate Architecture: armel Version: 2.2.0-6 Distribution: precise Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Andreas Tille Description: exonerate - generic tool for pairwise sequence comparison Changes: exonerate (2.2.0-6) unstable; urgency=low . * debian/patches/autoreconf.patch: Removed because not needed when using dh-autoreconf Checksums-Sha1: 315d7cac45caa4c85330e68e879f2945c00ad1c4 3244324 exonerate_2.2.0-6_armel.deb Checksums-Sha256: 3a8a849e7dd0da7d11aad70e51e5bfcf684091bb6c2238bb779d43f7cc7f2e24 3244324 exonerate_2.2.0-6_armel.deb Files: 736bf1cdc243ec83e8597eec5428ecd8 3244324 science optional exonerate_2.2.0-6_armel.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/exonerate-2.2.0 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base m4 gettext file zlib1g-dev libglib2.0-data autotools-dev po-debconf libglib2.0-dev dh-autoreconf libcroco3 libxml2 libpopt0 pkg-config libpcre3-dev automake libgettextpo0 man-db libtool intltool-debian libreadline-dev html2text libreadline6-dev gettext-base debhelper libunistring0 libtinfo-dev libmagic1 libpipeline1 bsdmainutils libpcrecpp0 libglib2.0-bin autoconf (Reading database ... 16180 files and directories currently installed.) Removing libglib2.0-dev ... Removing dh-autoreconf ... Removing pkg-config ... Removing libpcre3-dev ... Removing automake ... Removing libtool ... Removing libreadline-dev ... Removing libreadline6-dev ... Removing debhelper ... Removing libtinfo-dev ... Removing libpcrecpp0 ... Purging configuration files for libpcrecpp0 ... Removing libglib2.0-bin ... Purging configuration files for libglib2.0-bin ... Removing autoconf ... Purging configuration files for autoconf ... Removing m4 ... Removing file ... Removing zlib1g-dev ... Removing libglib2.0-data ... Removing autotools-dev ... Removing po-debconf ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing html2text ... Purging configuration files for html2text ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing libgettextpo0 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Processing triggers for libglib2.0-0 ... No schema files found: doing nothing. Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20120124-0608 Build needed 03:05:03, 114184k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa'] Scanning for processes to kill in build /home/buildd/build-8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa'] Unmounting chroot for build 8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa... none /home/buildd/build-8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa/chroot-autobuild/dev/pts devpts rw,relatime,mode=600,ptmxmode=000 0 0 none /home/buildd/build-8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa'] Removing build 8a3cf5b94b2d4a4bccb2e6c91aee64eb940094fa