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dindel package

dindel 1.01+dfsg-4build2 source package in Ubuntu

Changelog

dindel (1.01+dfsg-4build2) bionic; urgency=medium

  * No-change rebuild for boost soname change.

 -- Matthias Klose <email address hidden>  Thu, 26 Oct 2017 17:12:59 +0000

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Bionic
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release universe misc

Downloads

File Size SHA-256 Checksum
dindel_1.01+dfsg.orig.tar.xz 73.9 KiB 28e83cc4007216f604cdccc3e56d57e897a3782c818bf60756c44ee327627a66
dindel_1.01+dfsg-4build2.debian.tar.xz 7.2 KiB beeb0b9bfb7b49a4a1c16516b9a61a9a6027b089ce16467c418402a9fe949b27
dindel_1.01+dfsg-4build2.dsc 2.2 KiB f4bc08dae7e6dcd73ffc971c3f1984a9dbb2c9543888bb21626dc9367a2e047a

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Binary packages built by this source

dindel: determines indel calls from short-read data

 Dindel is a program for calling small indels from short-read sequence
 data ('next generation sequence data'). It currently is designed to
 handle only Illumina data.
 .
 Dindel requires a BAM file containing the read-alignments as input. It
 then extracts candidate indels from the BAM file, and realigns the reads
 to candidate haplotypes consisting of these candidate indels. If there
 is sufficient evidence for an alternative haplotype to the reference,
 it will call an indel.
 .
 It is possible to test indels discovered with other methods using Dindel,
 for instance longer indels obtained through assembly methods. Dindel
 will then realign both mapped and unmapped reads to see if the candidate
 indel is supported by the reads.
 .
 Dindel outputs both genotype likelihoods and includes a script to
 convert these to a VCF file with indel and SNP calls.
 .
 There is basic support for outputting realigned BAM files for each
 realignment-window. These realigned BAM files can be used to call SNPs
 near (candidate) indels.

dindel-dbgsym: No summary available for dindel-dbgsym in ubuntu cosmic.

No description available for dindel-dbgsym in ubuntu cosmic.