RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux adare 3.2.0-53-powerpc64-smp #81-Ubuntu SMP Thu Aug 22 21:17:14 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.2. Syncing the system clock with the buildd NTP service... 28 Apr 03:35:18 ntpdate[15489]: adjust time server 10.211.37.1 offset 0.000033 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5941944', '/home/buildd/filecache-default/1d5e9cd5f840e14336069afdfa9b3678588486b5'] Unpacking chroot for build PACKAGEBUILD-5941944 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5941944'] Mounting chroot for build PACKAGEBUILD-5941944 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5941944', 'deb http://ftpmaster.internal/ubuntu utopic main universe', 'deb http://ftpmaster.internal/ubuntu utopic-security main universe', 'deb http://ftpmaster.internal/ubuntu utopic-updates main universe', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5941944 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5941944', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-5941944 Ign http://ftpmaster.internal utopic InRelease Ign http://ftpmaster.internal utopic-security InRelease Ign http://ftpmaster.internal utopic-updates InRelease Ign http://ftpmaster.internal utopic-proposed InRelease Get:1 http://ftpmaster.internal utopic Release.gpg [933 B] Get:2 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:3 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal utopic-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal utopic Release [58.5 kB] Get:6 http://ftpmaster.internal utopic-security Release [58.5 kB] Get:7 http://ftpmaster.internal utopic-updates Release [58.5 kB] Get:8 http://ftpmaster.internal utopic-proposed Release [58.5 kB] Get:9 http://ftpmaster.internal utopic/main powerpc Packages [1305 kB] Get:10 http://ftpmaster.internal utopic/universe powerpc Packages [5799 kB] Get:11 http://ftpmaster.internal utopic/main Translation-en [768 kB] Get:12 http://ftpmaster.internal utopic/universe Translation-en [4140 kB] Get:13 http://ftpmaster.internal utopic-security/main powerpc Packages [14 B] Get:14 http://ftpmaster.internal utopic-security/universe powerpc Packages [14 B] Get:15 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:16 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:17 http://ftpmaster.internal utopic-updates/main powerpc Packages [14 B] Get:18 http://ftpmaster.internal utopic-updates/universe powerpc Packages [14 B] Get:19 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:20 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Get:21 http://ftpmaster.internal utopic-proposed/main powerpc Packages [34.8 kB] Get:22 http://ftpmaster.internal utopic-proposed/universe powerpc Packages [163 kB] Get:23 http://ftpmaster.internal utopic-proposed/main Translation-en [22.5 kB] Get:24 http://ftpmaster.internal utopic-proposed/universe Translation-en [158 kB] Fetched 12.6 MB in 15s (831 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: librtmp0 Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: libhogweed2 libnettle4 librtmp1 The following packages will be upgraded: advancecomp apt apt-transport-https base-files bash binutils cpp-4.8 dpkg dpkg-dev findutils g++-4.8 gcc-4.8 gcc-4.8-base gcc-4.9-base grep iproute2 kmod libapt-pkg4.12 libasan0 libatomic1 libcurl3-gnutls libdpkg-perl libgcc-4.8-dev libgcc1 libgomp1 libjson-c2 libjson0 libkmod2 libpcre3 libsasl2-2 libsasl2-modules-db libstdc++-4.8-dev libstdc++6 libtimedate-perl libudev1 module-init-tools patch tar udev 39 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 24.8 MB of archives. After this operation, 1121 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main base-files powerpc 7.2ubuntu6 [61.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main bash powerpc 4.3-7ubuntu1 [519 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main dpkg powerpc 1.17.7ubuntu1 [1957 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main findutils powerpc 4.4.2-8 [229 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main grep powerpc 2.18-2 [139 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main tar powerpc 1.27.1-2 [182 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.9-base powerpc 4.9.0-1ubuntu3 [16.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main libgcc1 powerpc 1:4.9.0-1ubuntu3 [35.2 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++6 powerpc 4.9.0-1ubuntu3 [279 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libapt-pkg4.12 powerpc 1.0.2ubuntu2 [603 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main apt powerpc 1.0.2ubuntu2 [938 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libpcre3 powerpc 1:8.31-5ubuntu1 [168 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main libjson-c2 powerpc 0.11-4ubuntu1 [21.2 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main libkmod2 powerpc 16-2ubuntu2 [37.2 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic-proposed/main udev powerpc 204-10ubuntu1 [729 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libudev1 powerpc 204-10ubuntu1 [41.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main kmod powerpc 16-2ubuntu2 [82.0 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main module-init-tools all 16-2ubuntu2 [2086 B] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main libnettle4 powerpc 2.7.1-2 [113 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libhogweed2 powerpc 2.7.1-2 [119 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic-proposed/main librtmp1 powerpc 2.4+20131018.git79459a2-2 [50.1 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl3-gnutls powerpc 7.35.0-1ubuntu3 [151 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-2 powerpc 2.1.26.dfsg1-9 [43.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-modules-db powerpc 2.1.26.dfsg1-9 [13.9 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main libgomp1 powerpc 4.9.0-1ubuntu3 [35.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main g++-4.8 powerpc 4.8.2-21ubuntu1 [4499 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++-4.8-dev powerpc 4.8.2-21ubuntu1 [1052 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8 powerpc 4.8.2-21ubuntu1 [4537 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main cpp-4.8 powerpc 4.8.2-21ubuntu1 [4153 kB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main binutils powerpc 2.24.51.20140425-0ubuntu2 [2046 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main libatomic1 powerpc 4.9.0-1ubuntu3 [7354 B] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main libgcc-4.8-dev powerpc 4.8.2-21ubuntu1 [285 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic/main libasan0 powerpc 4.8.2-21ubuntu1 [62.7 kB] Get:34 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8-base powerpc 4.8.2-21ubuntu1 [15.6 kB] Get:35 http://ftpmaster.internal/ubuntu/ utopic/main iproute2 powerpc 3.14.0-1 [380 kB] Get:36 http://ftpmaster.internal/ubuntu/ utopic/main libjson0 powerpc 0.11-4ubuntu1 [1142 B] Get:37 http://ftpmaster.internal/ubuntu/ utopic/main apt-transport-https powerpc 1.0.2ubuntu2 [23.6 kB] Get:38 http://ftpmaster.internal/ubuntu/ utopic/main advancecomp powerpc 1.19-1 [142 kB] Get:39 http://ftpmaster.internal/ubuntu/ utopic/main libtimedate-perl all 2.3000-2 [37.5 kB] Get:40 http://ftpmaster.internal/ubuntu/ utopic/main dpkg-dev all 1.17.7ubuntu1 [726 kB] Get:41 http://ftpmaster.internal/ubuntu/ utopic/main libdpkg-perl all 1.17.7ubuntu1 [180 kB] Get:42 http://ftpmaster.internal/ubuntu/ utopic/main patch powerpc 2.7.1-5 [86.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.8 MB in 2s (11.8 MB/s) (Reading database ... 11694 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu6_powerpc.deb ... Unpacking base-files (7.2ubuntu6) over (7.2ubuntu5) ... Setting up base-files (7.2ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11694 files and directories currently installed.) Preparing to unpack .../bash_4.3-7ubuntu1_powerpc.deb ... Unpacking bash (4.3-7ubuntu1) over (4.3-6ubuntu1) ... Setting up bash (4.3-7ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11694 files and directories currently installed.) Preparing to unpack .../dpkg_1.17.7ubuntu1_powerpc.deb ... Unpacking dpkg (1.17.7ubuntu1) over (1.17.5ubuntu5) ... Setting up dpkg (1.17.7ubuntu1) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../findutils_4.4.2-8_powerpc.deb ... Unpacking findutils (4.4.2-8) over (4.4.2-7) ... Setting up findutils (4.4.2-8) ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../grep_2.18-2_powerpc.deb ... Unpacking grep (2.18-2) over (2.16-1) ... Setting up grep (2.18-2) ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../tar_1.27.1-2_powerpc.deb ... Unpacking tar (1.27.1-2) over (1.27.1-1) ... Setting up tar (1.27.1-2) ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../gcc-4.9-base_4.9.0-1ubuntu3_powerpc.deb ... Unpacking gcc-4.9-base:powerpc (4.9.0-1ubuntu3) over (4.9-20140406-0ubuntu1) ... Setting up gcc-4.9-base:powerpc (4.9.0-1ubuntu3) ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9.0-1ubuntu3_powerpc.deb ... Unpacking libgcc1:powerpc (1:4.9.0-1ubuntu3) over (1:4.9-20140406-0ubuntu1) ... Setting up libgcc1:powerpc (1:4.9.0-1ubuntu3) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.0-1ubuntu3_powerpc.deb ... Unpacking libstdc++6:powerpc (4.9.0-1ubuntu3) over (4.8.2-19ubuntu1) ... Setting up libstdc++6:powerpc (4.9.0-1ubuntu3) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../libapt-pkg4.12_1.0.2ubuntu2_powerpc.deb ... Unpacking libapt-pkg4.12:powerpc (1.0.2ubuntu2) over (1.0.1ubuntu2) ... Setting up libapt-pkg4.12:powerpc (1.0.2ubuntu2) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../apt_1.0.2ubuntu2_powerpc.deb ... Unpacking apt (1.0.2ubuntu2) over (1.0.1ubuntu2) ... Setting up apt (1.0.2ubuntu2) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../libpcre3_1%3a8.31-5ubuntu1_powerpc.deb ... Unpacking libpcre3:powerpc (1:8.31-5ubuntu1) over (1:8.31-2ubuntu2) ... Setting up libpcre3:powerpc (1:8.31-5ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../libjson-c2_0.11-4ubuntu1_powerpc.deb ... Unpacking libjson-c2:powerpc (0.11-4ubuntu1) over (0.11-3ubuntu1) ... Preparing to unpack .../libkmod2_16-2ubuntu2_powerpc.deb ... Unpacking libkmod2:powerpc (16-2ubuntu2) over (15-0ubuntu6) ... Preparing to unpack .../udev_204-10ubuntu1_powerpc.deb ... Unpacking udev (204-10ubuntu1) over (204-5ubuntu20) ... Preparing to unpack .../libudev1_204-10ubuntu1_powerpc.deb ... Unpacking libudev1:powerpc (204-10ubuntu1) over (204-5ubuntu20) ... Preparing to unpack .../kmod_16-2ubuntu2_powerpc.deb ... Unpacking kmod (16-2ubuntu2) over (15-0ubuntu6) ... Preparing to unpack .../module-init-tools_16-2ubuntu2_all.deb ... Unpacking module-init-tools (16-2ubuntu2) over (15-0ubuntu6) ... Selecting previously unselected package libnettle4:powerpc. Preparing to unpack .../libnettle4_2.7.1-2_powerpc.deb ... Unpacking libnettle4:powerpc (2.7.1-2) ... Selecting previously unselected package libhogweed2:powerpc. Preparing to unpack .../libhogweed2_2.7.1-2_powerpc.deb ... Unpacking libhogweed2:powerpc (2.7.1-2) ... Selecting previously unselected package librtmp1:powerpc. Preparing to unpack .../librtmp1_2.4+20131018.git79459a2-2_powerpc.deb ... Unpacking librtmp1:powerpc (2.4+20131018.git79459a2-2) ... Preparing to unpack .../libcurl3-gnutls_7.35.0-1ubuntu3_powerpc.deb ... Unpacking libcurl3-gnutls:powerpc (7.35.0-1ubuntu3) over (7.35.0-1ubuntu2) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-9_powerpc.deb ... Unpacking libsasl2-2:powerpc (2.1.26.dfsg1-9) over (2.1.25.dfsg1-17build1) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-9_powerpc.deb ... Unpacking libsasl2-modules-db:powerpc (2.1.26.dfsg1-9) over (2.1.25.dfsg1-17build1) ... Preparing to unpack .../libgomp1_4.9.0-1ubuntu3_powerpc.deb ... Unpacking libgomp1:powerpc (4.9.0-1ubuntu3) over (4.8.2-19ubuntu1) ... Preparing to unpack .../g++-4.8_4.8.2-21ubuntu1_powerpc.deb ... Unpacking g++-4.8 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ... Preparing to unpack .../libstdc++-4.8-dev_4.8.2-21ubuntu1_powerpc.deb ... Unpacking libstdc++-4.8-dev:powerpc (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ... Preparing to unpack .../gcc-4.8_4.8.2-21ubuntu1_powerpc.deb ... Unpacking gcc-4.8 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ... Preparing to unpack .../cpp-4.8_4.8.2-21ubuntu1_powerpc.deb ... Unpacking cpp-4.8 (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ... Preparing to unpack .../binutils_2.24.51.20140425-0ubuntu2_powerpc.deb ... Unpacking binutils (2.24.51.20140425-0ubuntu2) over (2.24-5ubuntu3) ... Preparing to unpack .../libatomic1_4.9.0-1ubuntu3_powerpc.deb ... Unpacking libatomic1:powerpc (4.9.0-1ubuntu3) over (4.8.2-19ubuntu1) ... Preparing to unpack .../libgcc-4.8-dev_4.8.2-21ubuntu1_powerpc.deb ... Unpacking libgcc-4.8-dev:powerpc (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ... Preparing to unpack .../libasan0_4.8.2-21ubuntu1_powerpc.deb ... Unpacking libasan0:powerpc (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ... Preparing to unpack .../gcc-4.8-base_4.8.2-21ubuntu1_powerpc.deb ... Unpacking gcc-4.8-base:powerpc (4.8.2-21ubuntu1) over (4.8.2-19ubuntu1) ... Preparing to unpack .../iproute2_3.14.0-1_powerpc.deb ... Unpacking iproute2 (3.14.0-1) over (3.12.0-2) ... Preparing to unpack .../libjson0_0.11-4ubuntu1_powerpc.deb ... Unpacking libjson0:powerpc (0.11-4ubuntu1) over (0.11-3ubuntu1) ... Preparing to unpack .../apt-transport-https_1.0.2ubuntu2_powerpc.deb ... Unpacking apt-transport-https (1.0.2ubuntu2) over (1.0.1ubuntu2) ... Preparing to unpack .../advancecomp_1.19-1_powerpc.deb ... Unpacking advancecomp (1.19-1) over (1.18-1) ... Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) over (2.3000-1) ... Preparing to unpack .../dpkg-dev_1.17.7ubuntu1_all.deb ... Unpacking dpkg-dev (1.17.7ubuntu1) over (1.17.5ubuntu5) ... Preparing to unpack .../libdpkg-perl_1.17.7ubuntu1_all.deb ... Unpacking libdpkg-perl (1.17.7ubuntu1) over (1.17.5ubuntu5) ... Preparing to unpack .../patch_2.7.1-5_powerpc.deb ... Unpacking patch (2.7.1-5) over (2.7.1-4) ... Setting up libjson-c2:powerpc (0.11-4ubuntu1) ... Setting up libkmod2:powerpc (16-2ubuntu2) ... Setting up libudev1:powerpc (204-10ubuntu1) ... Setting up udev (204-10ubuntu1) ... Installing new version of config file /etc/modprobe.d/fbdev-blacklist.conf ... Installing new version of config file /etc/init/udev-finish.conf ... Installing new version of config file /etc/init.d/udev ... invoke-rc.d: policy-rc.d denied execution of restart. update-initramfs: deferring update (trigger activated) Setting up kmod (16-2ubuntu2) ... Installing new version of config file /etc/init.d/kmod ... Setting up module-init-tools (16-2ubuntu2) ... Setting up libnettle4:powerpc (2.7.1-2) ... Setting up libhogweed2:powerpc (2.7.1-2) ... Setting up librtmp1:powerpc (2.4+20131018.git79459a2-2) ... Setting up libcurl3-gnutls:powerpc (7.35.0-1ubuntu3) ... Setting up libsasl2-modules-db:powerpc (2.1.26.dfsg1-9) ... Setting up libsasl2-2:powerpc (2.1.26.dfsg1-9) ... Setting up libgomp1:powerpc (4.9.0-1ubuntu3) ... Setting up gcc-4.8-base:powerpc (4.8.2-21ubuntu1) ... Setting up cpp-4.8 (4.8.2-21ubuntu1) ... Setting up binutils (2.24.51.20140425-0ubuntu2) ... Setting up libatomic1:powerpc (4.9.0-1ubuntu3) ... Setting up libasan0:powerpc (4.8.2-21ubuntu1) ... Setting up libgcc-4.8-dev:powerpc (4.8.2-21ubuntu1) ... Setting up gcc-4.8 (4.8.2-21ubuntu1) ... Setting up libstdc++-4.8-dev:powerpc (4.8.2-21ubuntu1) ... Setting up g++-4.8 (4.8.2-21ubuntu1) ... Setting up iproute2 (3.14.0-1) ... Setting up libjson0:powerpc (0.11-4ubuntu1) ... Setting up apt-transport-https (1.0.2ubuntu2) ... Setting up advancecomp (1.19-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libdpkg-perl (1.17.7ubuntu1) ... Setting up patch (2.7.1-5) ... Setting up dpkg-dev (1.17.7ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Processing triggers for initramfs-tools (0.103ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5941944', 'powerpc', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=universe', 'bowtie_1.0.0-6.dsc'] Initiating build PACKAGEBUILD-5941944 with 2 jobs across 2 processor cores. Kernel reported to sbuild: 3.2.0-53-powerpc64-smp #81-Ubuntu SMP Thu Aug 22 21:17:14 UTC 2013 ppc Automatic build of bowtie_1.0.0-6 on adare by sbuild/powerpc 1.170.5 Build started at 20140428-0337 ****************************************************************************** bowtie_1.0.0-6.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), help2man, seqan-dev (>= 1.4) Checking for already installed source dependencies... debhelper: missing help2man: missing seqan-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper help2man seqan-dev Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: librtmp0 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 liblocale-gettext-perl libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base help2man intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 liblocale-gettext-perl libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf seqan-dev 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. Need to get 8099 kB of archives. After this operation, 46.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main liblocale-gettext-perl powerpc 1.05-8 [17.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 powerpc 1:5.14-2ubuntu3 [182 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 powerpc 0.18.3.2-1ubuntu1 [6484 B] Get:4 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libglib2.0-0 powerpc 2.40.0-3 [929 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 powerpc 1.3.0-1 [22.0 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 powerpc 2.9.1+dfsg1-3ubuntu4 [473 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main groff-base powerpc 1.22.2-5 [1101 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils powerpc 9.0.5ubuntu1 [202 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main man-db powerpc 2.6.7.1-1 [833 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libcroco3 powerpc 0.6.8-2ubuntu1 [70.1 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 powerpc 0.9.3-5ubuntu3 [252 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main file powerpc 1:5.14-2ubuntu3 [18.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base powerpc 0.18.3.2-1ubuntu1 [45.0 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main gettext powerpc 0.18.3.2-1ubuntu1 [781 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.95~2430-0ubuntu5 [11.3 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20131227ubuntu1 [604 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main help2man powerpc 1.45.1 [60.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic-proposed/universe seqan-dev all 1.4.1-3 [2248 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8099 kB in 0s (10.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11697 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.05-8_powerpc.deb ... Unpacking liblocale-gettext-perl (1.05-8) ... Selecting previously unselected package libmagic1:powerpc. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu3_powerpc.deb ... Unpacking libmagic1:powerpc (1:5.14-2ubuntu3) ... Selecting previously unselected package libasprintf0c2:powerpc. Preparing to unpack .../libasprintf0c2_0.18.3.2-1ubuntu1_powerpc.deb ... Unpacking libasprintf0c2:powerpc (0.18.3.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:powerpc. Preparing to unpack .../libglib2.0-0_2.40.0-3_powerpc.deb ... Unpacking libglib2.0-0:powerpc (2.40.0-3) ... Selecting previously unselected package libpipeline1:powerpc. Preparing to unpack .../libpipeline1_1.3.0-1_powerpc.deb ... Unpacking libpipeline1:powerpc (1.3.0-1) ... Selecting previously unselected package libxml2:powerpc. 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Preparing to unpack .../debhelper_9.20131227ubuntu1_all.deb ... Unpacking debhelper (9.20131227ubuntu1) ... Selecting previously unselected package help2man. Preparing to unpack .../help2man_1.45.1_powerpc.deb ... Unpacking help2man (1.45.1) ... Selecting previously unselected package seqan-dev. Preparing to unpack .../seqan-dev_1.4.1-3_all.deb ... Unpacking seqan-dev (1.4.1-3) ... Setting up liblocale-gettext-perl (1.05-8) ... Setting up libmagic1:powerpc (1:5.14-2ubuntu3) ... Setting up libasprintf0c2:powerpc (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:powerpc (2.40.0-3) ... No schema files found: doing nothing. Setting up libpipeline1:powerpc (1.3.0-1) ... Setting up libxml2:powerpc (2.9.1+dfsg1-3ubuntu4) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:powerpc (0.6.8-2ubuntu1) ... Setting up libunistring0:powerpc (0.9.3-5ubuntu3) ... Setting up file (1:5.14-2ubuntu3) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.8.95~2430-0ubuntu5) ... Setting up debhelper (9.20131227ubuntu1) ... Setting up help2man (1.45.1) ... Setting up seqan-dev (1.4.1-3) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-0ubuntu6 make_3.81-8.2ubuntu3 dpkg-dev_1.17.7ubuntu1 gcc-4.8_4.8.2-21ubuntu1 g++-4.8_4.8.2-21ubuntu1 binutils_2.24.51.20140425-0ubuntu2 libstdc++-4.8-dev_4.8.2-21ubuntu1 libstdc++6_4.9.0-1ubuntu3 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sat Mar 8 14:27:16 2014 UTC using RSA key ID 36D33D07 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bowtie_1.0.0-6.dsc dpkg-source: info: extracting bowtie in bowtie-1.0.0 dpkg-source: info: unpacking bowtie_1.0.0.orig.tar.gz dpkg-source: info: unpacking bowtie_1.0.0-6.debian.tar.gz dpkg-source: info: applying use-dpkg-buildflags.patch dpkg-source: info: applying use_debian_seqan.patch dpkg-source: info: applying seqan-fix-setBegin-call.patch dpkg-source: info: applying seqan-rename-ChunkPool.patch dpkg-source: info: applying seqan-rename-fill-to-resize.patch dpkg-source: info: applying disable_bits_flag.patch dpkg-source: info: applying no_hash_style_both_for_mips.patch dpkg-source: info: applying seqan-popcount.patch dpkg-buildpackage: source package bowtie dpkg-buildpackage: source version 1.0.0-6 dpkg-buildpackage: source distribution unstable dpkg-source --before-build bowtie-1.0.0 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/bowtie-1.0.0' rm -f .bowtie* dh_auto_clean make[2]: Entering directory `/build/buildd/bowtie-1.0.0' rm -f bowtie-build bowtie bowtie-inspect bowtie-build-debug bowtie-debug bowtie-inspect-debug \ bowtie_prof \ bowtie-build.exe bowtie.exe bowtie-inspect.exe bowtie-build-debug.exe bowtie-debug.exe bowtie-inspect-debug.exe bowtie_prof.exe \ bowtie-src.zip bowtie-bin.zip rm -f core.* make[2]: Leaving directory `/build/buildd/bowtie-1.0.0' make[1]: Leaving directory `/build/buildd/bowtie-1.0.0' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/bowtie-1.0.0' /usr/bin/make allall make[2]: Entering directory `/build/buildd/bowtie-1.0.0' g++ -O3 -DCOMPILER_OPTIONS="\"-O3 -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro\"" -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro \ -fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -DNDEBUG -Wall \ -I /usr/include/seqan \ -o bowtie-build ebwt_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp ebwt.cpp tinythread.cpp bowtie_build_main.cpp \ -lpthread In file included from ebwt.h:27:0, from ebwt_build.cpp:11: blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA::buildSamples()': blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA::nextBlock()': blockwise_sa.h:745:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ g++ -O3 -DCOMPILER_OPTIONS="\"-O3 -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro\"" -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro \ -fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -DNDEBUG -Wall \ -I /usr/include/seqan \ -o bowtie ebwt_search.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp ebwt.cpp tinythread.cpp qual.cpp pat.cpp ebwt_search_util.cpp ref_aligner.cpp log.cpp hit_set.cpp refmap.cpp annot.cpp sam.cpp color.cpp color_dec.cpp hit.cpp bowtie_main.cpp \ -lpthread In file included from ebwt.h:27:0, from ebwt_search.cpp:14: blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA::buildSamples()': blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA::nextBlock()': blockwise_sa.h:745:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ g++ -O3 \ -DCOMPILER_OPTIONS="\"-O3 -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro\"" -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro \ -fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -Wall \ -I /usr/include/seqan -I . \ -o bowtie-inspect bowtie_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp ebwt.cpp tinythread.cpp \ -lpthread In file included from ebwt.h:27:0, from bowtie_inspect.cpp:10: blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA::buildSamples()': blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA::nextBlock()': blockwise_sa.h:745:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ g++ -O0 -g3 -DCOMPILER_OPTIONS="\"-O0 -g3 -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro\"" -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro \ -fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -Wall \ -I /usr/include/seqan \ -o bowtie-build-debug ebwt_build.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp ebwt.cpp tinythread.cpp bowtie_build_main.cpp \ -lpthread In file included from ebwt.h:27:0, from ebwt_build.cpp:11: blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA::buildSamples()': blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA::nextBlock()': blockwise_sa.h:745:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ g++ -O0 -g3 \ -DCOMPILER_OPTIONS="\"-O0 -g3 -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro\"" -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro \ -fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -Wall \ -I /usr/include/seqan \ -o bowtie-debug ebwt_search.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp ebwt.cpp tinythread.cpp qual.cpp pat.cpp ebwt_search_util.cpp ref_aligner.cpp log.cpp hit_set.cpp refmap.cpp annot.cpp sam.cpp color.cpp color_dec.cpp hit.cpp bowtie_main.cpp \ -lpthread In file included from ebwt.h:27:0, from ebwt_search.cpp:14: blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA::buildSamples()': blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA::nextBlock()': blockwise_sa.h:745:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ g++ -O0 -g3 \ -DCOMPILER_OPTIONS="\"-O0 -g3 -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro\"" -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro \ -fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -Wall \ -I /usr/include/seqan -I . \ -o bowtie-inspect-debug bowtie_inspect.cpp \ ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp ebwt.cpp tinythread.cpp \ -lpthread In file included from ebwt.h:27:0, from bowtie_inspect.cpp:10: blockwise_sa.h: In member function 'void KarkkainenBlockwiseSA::buildSamples()': blockwise_sa.h:380:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ blockwise_sa.h: In member function 'virtual void KarkkainenBlockwiseSA::nextBlock()': blockwise_sa.h:745:37: warning: typedef 'TAlphabet' locally defined but not used [-Wunused-local-typedefs] typedef typename Value::Type TAlphabet; ^ make[2]: Leaving directory `/build/buildd/bowtie-1.0.0' make[1]: Leaving directory `/build/buildd/bowtie-1.0.0' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/bowtie-1.0.0' help2man --name="ultrafast memory-efficient short read aligner" --no-info \ /build/buildd/bowtie-1.0.0/bowtie > /build/buildd/bowtie-1.0.0/debian/bowtie/usr/share/man/man1/bowtie.1 help2man --name="building a colorspace index for bowtie" --no-info \ /build/buildd/bowtie-1.0.0/bowtie-build > /build/buildd/bowtie-1.0.0/debian/bowtie/usr/share/man/man1/bowtie-build.1 help2man --name="extracts information from a bowtie index" --no-info \ /build/buildd/bowtie-1.0.0/bowtie-inspect > /build/buildd/bowtie-1.0.0/debian/bowtie/usr/share/man/man1/bowtie-inspect.1 make[1]: Leaving directory `/build/buildd/bowtie-1.0.0' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/build/buildd/bowtie-1.0.0' dh_compress -X.ebwt make[1]: Leaving directory `/build/buildd/bowtie-1.0.0' dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: bowtie dh_strip debug symbol extraction: packages to act on: bowtie dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `bowtie-dbgsym' in `../bowtie-dbgsym_1.0.0-6_powerpc.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 121 pkgstriptranslations: processing bowtie (in debian/bowtie); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bowtie/DEBIAN/control, package bowtie, directory debian/bowtie pkgstripfiles: PNG optimization for package bowtie took 0 s dpkg-deb: warning: 'debian/bowtie/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `bowtie' in `../bowtie_1.0.0-6_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../bowtie_1.0.0-6_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build bowtie-1.0.0 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140428-0350 Publishing debug debs. chroot-autobuild/build/buildd/bowtie_1.0.0-6_powerpc.deb: new debian package, version 2.0. size 750976 bytes: control archive= 1404 bytes. 1073 bytes, 22 lines control 1076 bytes, 17 lines md5sums Package: bowtie Version: 1.0.0-6 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3127 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.2.1), libstdc++6 (>= 4.4.0) Suggests: bowtie-examples Section: science Priority: extra Homepage: http://bowtie-bio.sourceforge.net/ Description: Ultrafast memory-efficient short read aligner This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run. . Bowtie aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). chroot-autobuild/build/buildd/bowtie_1.0.0-6_powerpc.deb: drwxr-xr-x root/root 0 2014-04-28 03:50 ./ drwxr-xr-x root/root 0 2014-04-28 03:49 ./usr/ drwxr-xr-x root/root 0 2014-04-28 03:49 ./usr/share/ drwxr-xr-x root/root 0 2014-04-28 03:49 ./usr/share/man/ drwxr-xr-x root/root 0 2014-04-28 03:49 ./usr/share/man/man1/ -rw-r--r-- root/root 900 2014-04-28 03:49 ./usr/share/man/man1/bowtie-inspect.1.gz -rw-r--r-- root/root 2658 2014-04-28 03:49 ./usr/share/man/man1/bowtie.1.gz -rw-r--r-- root/root 1139 2014-04-28 03:49 ./usr/share/man/man1/bowtie-build.1.gz drwxr-xr-x root/root 0 2014-04-28 03:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-04-28 03:49 ./usr/share/doc/bowtie/ -rw-r--r-- root/root 2576 2013-03-08 09:06 ./usr/share/doc/bowtie/TUTORIAL.gz -rw-r--r-- root/root 107525 2013-04-09 15:30 ./usr/share/doc/bowtie/manual.html -rw-r--r-- root/root 4182 2013-03-08 09:06 ./usr/share/doc/bowtie/style.css -rw-r--r-- root/root 2543 2013-04-18 09:04 ./usr/share/doc/bowtie/copyright -rw-r--r-- root/root 11332 2013-04-09 15:30 ./usr/share/doc/bowtie/NEWS.gz -rw-r--r-- root/root 21534 2013-04-09 15:42 ./usr/share/doc/bowtie/MANUAL.gz -rw-r--r-- root/root 1390 2014-03-08 14:11 ./usr/share/doc/bowtie/changelog.Debian.gz drwxr-xr-x root/root 0 2014-04-28 03:49 ./usr/share/doc-base/ -rw-r--r-- root/root 1010 2013-04-18 09:04 ./usr/share/doc-base/bowtie drwxr-xr-x root/root 0 2014-04-28 03:50 ./usr/bin/ -rwxr-xr-x root/root 584604 2014-04-28 03:50 ./usr/bin/bowtie -rwxr-xr-x root/root 236772 2014-04-28 03:50 ./usr/bin/bowtie-build -rwxr-xr-x root/root 213420 2014-04-28 03:50 ./usr/bin/bowtie-inspect -rwxr-xr-x root/root 576808 2014-04-28 03:50 ./usr/bin/bowtie-build-debug -rwxr-xr-x root/root 1178552 2014-04-28 03:50 ./usr/bin/bowtie-debug -rwxr-xr-x root/root 213420 2014-04-28 03:50 ./usr/bin/bowtie-inspect-debug lrwxrwxrwx root/root 0 2014-04-28 03:49 ./usr/share/man/man1/bowtie-inspect-debug.1.gz -> bowtie-inspect.1.gz lrwxrwxrwx root/root 0 2014-04-28 03:49 ./usr/share/man/man1/bowtie-build-debug.1.gz -> bowtie-build.1.gz lrwxrwxrwx root/root 0 2014-04-28 03:49 ./usr/share/man/man1/bowtie-debug.1.gz -> bowtie.1.gz bowtie_1.0.0-6_powerpc.changes: Format: 1.8 Date: Sat, 08 Mar 2014 15:13:16 +0200 Source: bowtie Binary: bowtie bowtie-examples Architecture: powerpc Version: 1.0.0-6 Distribution: utopic-proposed Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Ognyan Kulev Description: bowtie - Ultrafast memory-efficient short read aligner bowtie-examples - Examples for bowtie, the ultrafast memory-efficient short read al Closes: 733398 Changes: bowtie (1.0.0-6) unstable; urgency=low . * debian/patches/seqan-popcount.patch: New patch. (Closes: #733398) * Version 1.4 of seqan-dev is required now. * Standards-Version: 3.9.5 (no changes needed). * Updated Vcs-Svn and Vcs-Browse fields as per Debian-Med policy. Checksums-Sha1: 86066769fcf02e66817f5a40b2d9834cc3ddfa14 750976 bowtie_1.0.0-6_powerpc.deb Checksums-Sha256: aa9a7c655d712c5b2d358e1062c264347b178d67f21ae9bdaa1f567ed90ca32d 750976 bowtie_1.0.0-6_powerpc.deb Files: af984a1094472f513a7aad3be8f191f8 750976 science extra bowtie_1.0.0-6_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140428-0350 Build needed 00:12:43, 46184k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5941944'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5941944/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5941944'] Unmounting chroot for build PACKAGEBUILD-5941944... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5941944'] Removing build PACKAGEBUILD-5941944