Change log for bamtools package in Ubuntu
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bamtools (2.5.2+dfsg-6) unstable; urgency=medium * Fix output data on bigendian architectures (Thanks a lot for the patch from Vladimir Petko <email address hidden>!) Closes: #1075990 * Standards-Version: 4.7.0 (routine-update) * Build-Depends: s/pkg-config/pkgconf/ -- Andreas Tille <email address hidden> Fri, 12 Jul 2024 13:46:23 +0200
Available diffs
bamtools (2.5.2+dfsg-5ubuntu1) oracular; urgency=medium * d/p/do_not_corrupt_output.patch: add patch to avoid corrupting output on big-endian platforms (LP: #2072463). * d/p/filter_script.patch: add patch to address Debian bug 992143. * d/t/run-unit-test: enable filter test on all architectures. -- Vladimir Petko <email address hidden> Tue, 09 Jul 2024 15:57:31 +1200
Available diffs
bamtools (2.5.2+dfsg-5) unstable; urgency=medium * d/control: add myself to uploaders. * d/rules: preserve pristine Doxyfile. (Closes: #1043881) * typo.patch: new: fix typo caught by lintian. -- Étienne Mollier <email address hidden> Fri, 15 Dec 2023 19:09:45 +0100
Superseded in oracular-release |
Published in noble-release |
Published in mantic-release |
Published in lunar-release |
Deleted in lunar-proposed (Reason: Moved to lunar) |
bamtools (2.5.2+dfsg-4) unstable; urgency=medium * Team upload. * d/control: libbamtools-doc depends on libjs-jquery. Thanks to Andreas Beckmann (Closes: #988848) * Standards-Version: 4.6.2 (routine-update) -- Étienne Mollier <email address hidden> Mon, 19 Dec 2022 22:45:16 +0100
Available diffs
- diff from 2.5.2+dfsg-3 to 2.5.2+dfsg-4 (753 bytes)
bamtools (2.5.2+dfsg-3) unstable; urgency=medium * Reduce number of tests also for armel Closes: #992143 -- Andreas Tille <email address hidden> Fri, 02 Dec 2022 13:52:00 +0100
Available diffs
- diff from 2.5.2+dfsg-2 to 2.5.2+dfsg-3 (636 bytes)
bamtools (2.5.2+dfsg-2) unstable; urgency=medium * Do not try to move Doxyfile.bak which does not exist any more in doxygen 1.9.4 Closes: #1015861 * Build-Depends: pkg-config (since cmake is asking for it) * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille <email address hidden> Fri, 02 Sep 2022 19:53:29 +0200
Available diffs
Superseded in lunar-release |
Obsolete in kinetic-release |
Published in jammy-release |
Deleted in jammy-proposed (Reason: Moved to jammy) |
bamtools (2.5.1+dfsg-10build1) jammy; urgency=medium * No-change rebuild against libjsoncpp25 -- Steve Langasek <email address hidden> Tue, 14 Dec 2021 07:46:40 +0000
Available diffs
bamtools (2.5.1+dfsg-10) unstable; urgency=medium * Team upload. * Add gcc11.patch (Closes: 983981) * Remove bamtools.lintian-overrides -- Étienne Mollier <email address hidden> Sat, 06 Nov 2021 19:31:45 +0100
Available diffs
- diff from 2.5.1+dfsg-9 to 2.5.1+dfsg-10 (1.0 KiB)
Superseded in jammy-release |
Obsolete in impish-release |
Deleted in impish-proposed (Reason: Moved to impish) |
bamtools (2.5.1+dfsg-9) unstable; urgency=medium [ Steffen Möller ] * Update metadata - indent and ref to guix [ Andreas Tille ] * Extend means to prevent timeouts from amd64 also to armhf and s390x Closes: #987023 -- Andreas Tille <email address hidden> Thu, 15 Apr 2021 21:28:36 +0200
Available diffs
- diff from 2.5.1+dfsg-8 to 2.5.1+dfsg-9 (1.2 KiB)
Superseded in impish-release |
Obsolete in hirsute-release |
Deleted in hirsute-proposed (Reason: moved to Release) |
bamtools (2.5.1+dfsg-8) unstable; urgency=medium * Exclude test that times out on arm64 Closes: #953939 * Standards-Version: 4.5.1 (routine-update) -- Andreas Tille <email address hidden> Wed, 27 Jan 2021 08:26:37 +0100
Available diffs
bamtools (2.5.1+dfsg-7build1) hirsute; urgency=medium * Rebuild against new libjsoncpp24. -- Gianfranco Costamagna <email address hidden> Mon, 07 Dec 2020 15:21:38 +0100
Available diffs
Superseded in hirsute-release |
Obsolete in groovy-release |
Deleted in groovy-proposed (Reason: moved to Release) |
bamtools (2.5.1+dfsg-7) unstable; urgency=medium * Override dh_auto_install-indep Closes: #961777 -- Andreas Tille <email address hidden> Fri, 29 May 2020 13:00:25 +0200
Available diffs
- diff from 2.5.1+dfsg-6 to 2.5.1+dfsg-7 (730 bytes)
bamtools (2.5.1+dfsg-6) unstable; urgency=medium * Add IsSupplementaryAlignment() patch from bamtools code copy shipped with tiddit * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Submit. * Use d-shlibs * Build additional static lib -- Andreas Tille <email address hidden> Wed, 27 May 2020 12:14:50 +0200
Available diffs
Superseded in groovy-release |
Published in focal-release |
Deleted in focal-proposed (Reason: moved to Release) |
bamtools (2.5.1+dfsg-5build1) focal; urgency=medium * No-change rebuild for libgcc-s1 package name change. -- Matthias Klose <email address hidden> Tue, 24 Mar 2020 15:02:12 +0100
Available diffs
bamtools (2.5.1+dfsg-5) unstable; urgency=medium * Ignore one test that is known to fail on ppc64el architecture Closes: #933505 * Set upstream metadata fields: Bug-Database, Repository, Repository- Browse. -- Andreas Tille <email address hidden> Tue, 10 Dec 2019 12:00:36 +0100
Available diffs
- diff from 2.5.1+dfsg-3 to 2.5.1+dfsg-5 (2.6 KiB)
Superseded in focal-release |
Obsolete in eoan-release |
Obsolete in disco-release |
Obsolete in cosmic-release |
Deleted in cosmic-proposed (Reason: moved to release) |
bamtools (2.5.1+dfsg-3) unstable; urgency=medium * Point Vcs fields to salsa.debian.org * Use Breaks+Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) since the includes were formerly in lib package Closes: #894886 -- Andreas Tille <email address hidden> Thu, 05 Apr 2018 11:54:57 +0200
Available diffs
- diff from 2.4.1+dfsg-2 to 2.5.1+dfsg-3 (221.5 KiB)
Superseded in cosmic-release |
Published in bionic-release |
Obsolete in artful-release |
Deleted in artful-proposed (Reason: moved to release) |
bamtools (2.4.1+dfsg-2) unstable; urgency=medium * Team upload. [ Nadiya Sitdykova ] * add autopkgtest test-suite [ Afif Elghraoui ] * remove unused lintian overrides [ Steffen Moeller ] * debian/upstream/metadata: Added refs to bio.tools and OMICtools * debian/copyright: Corrected case of upstream name * debian/control: Updated policy compliance to 4.0.1 -- Nadiya Sitdykova <email address hidden> Mon, 07 Aug 2017 17:01:19 -0400
Available diffs
- diff from 2.4.1+dfsg-1 to 2.4.1+dfsg-2 (1.8 KiB)
Superseded in artful-release |
Obsolete in zesty-release |
Deleted in zesty-proposed (Reason: moved to release) |
bamtools (2.4.1+dfsg-1) unstable; urgency=medium * New upstream version * debhelper 10 * cme fix dpkg-control * d/watch: version=4 * Priority: optional * soversion stays at 2.4.0 (FIXME: in future versions this should be rather 2.5 without micro number) -- Andreas Tille <email address hidden> Fri, 13 Jan 2017 10:47:00 +0100
Available diffs
- diff from 2.4.0+dfsg-6 to 2.4.1+dfsg-1 (7.8 KiB)
Superseded in zesty-release |
Obsolete in yakkety-release |
Deleted in yakkety-proposed (Reason: moved to release) |
bamtools (2.4.0+dfsg-6) unstable; urgency=medium * Whoops, forgot the '+dfsg' in my fix for the movement of the development docs into their own -doc package. Thanks go to Andreas Beckmann <email address hidden> for his patience and help. (Closes: 817188) -- Michael R. Crusoe <email address hidden> Thu, 10 Mar 2016 01:38:21 -0800
Available diffs
Superseded in yakkety-release |
Published in xenial-release |
Deleted in xenial-proposed (Reason: moved to release) |
bamtools (2.4.0+dfsg-3build1) xenial; urgency=medium * No-change rebuild for the libjsoncpp transition. -- Łukasz 'sil2100' Zemczak <email address hidden> Tue, 09 Feb 2016 12:21:15 +0100
Available diffs
bamtools (2.4.0+dfsg-3) unstable; urgency=medium * allow to read bam files on big endian systems (Closes: #807979) * added sam_spec_example.sam and sam_spec_example.bam files * activated cmake testing framework abd added simple tests -- Dominique Belhachemi <email address hidden> Sun, 20 Dec 2015 15:41:42 -0500
Available diffs
- diff from 2.4.0+dfsg-2 to 2.4.0+dfsg-3 (1.9 KiB)
bamtools (2.4.0+dfsg-2) unstable; urgency=medium [ Kevin Murray ] * Fix re-upload confusion * Fix build of doxygen docs, add docs-base * Use uscan file renaming to name upstream tarball bamtools-Vxxx.tar.gz * Refresh patch queue [ Andreas Tille] * Fix linitan overides for bamtools -- Kevin Murray <email address hidden> Thu, 24 Sep 2015 17:27:16 +1000
Available diffs
Superseded in xenial-release |
Obsolete in wily-release |
Deleted in wily-proposed (Reason: moved to release) |
bamtools (2.4.0+dfsg-1build1) wily; urgency=medium * No-change rebuild against libjsoncpp0v5 -- Steve Langasek <email address hidden> Tue, 04 Aug 2015 00:36:47 +0000
Available diffs
bamtools (2.4.0+dfsg-1) unstable; urgency=medium * New upstream version * Fix d/watch + get-orig-source target * Adapt library package name to version number -- Andreas Tille <email address hidden> Sun, 05 Jul 2015 15:41:35 +0200
Available diffs
- diff from 2.3.0+dfsg-3 to 2.4.0+dfsg-1 (5.2 KiB)
bamtools (2.3.0+dfsg-3) unstable; urgency=medium [ Michael R. Crusoe ] * Make Doxygen documentation generation reproducible by eliminating timestamps. [ Andreas Tille ] * Install cmake file * Fix some issues in formatting of long descriptions (thanks for the patch to Daniele Forsi <email address hidden>) Closes: #780437 * cme fix dpkg-control -- Andreas Tille <email address hidden> Mon, 18 May 2015 11:53:14 +0200
Available diffs
- diff from 2.3.0+dfsg-2 to 2.3.0+dfsg-3 (4.5 KiB)
Superseded in wily-release |
Obsolete in vivid-release |
Obsolete in utopic-release |
Deleted in utopic-proposed (Reason: moved to release) |
bamtools (2.3.0+dfsg-2) unstable; urgency=medium * Drop d-shlibs patch and add versioned Build-Depends for d-shlibs Closes: #753210 -- Andreas Tille <email address hidden> Mon, 30 Jun 2014 09:50:50 +0200
Available diffs
- diff from 2.3.0+dfsg-1 to 2.3.0+dfsg-2 (2.8 KiB)
bamtools (2.3.0+dfsg-1) unstable; urgency=low * Initial release (Closes: #692498) -- Andreas Tille <email address hidden> Wed, 02 Apr 2014 13:11:47 +0200
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