https://launchpad.net/ubuntu/+archive/test-rebuild-20220617-kinetic/+build/24076371 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-028 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 23 Jun 18:21:55 ntpdate[1842]: adjust time server 10.211.37.1 offset 0.004831 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076371 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24076371 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076371 Starting target for build PACKAGEBUILD-24076371 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076371 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24076371 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076371 Adding trusted keys to build-PACKAGEBUILD-24076371 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076371 Updating target for build PACKAGEBUILD-24076371 Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 Packages [9632 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main Translation-en [4132 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [14.4 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5730 kB] Fetched 22.3 MB in 4s (5270 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 84 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 79.8 MB of archives. After this operation, 5324 kB of additional disk space will be used. Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libatomic1 amd64 12.1.0-2ubuntu1 [10.4 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libubsan1 amd64 12.1.0-2ubuntu1 [969 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libquadmath0 amd64 12.1.0-2ubuntu1 [152 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblsan0 amd64 12.1.0-2ubuntu1 [1060 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 libitm1 amd64 12.1.0-2ubuntu1 [29.5 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgomp1 amd64 12.1.0-2ubuntu1 [125 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-12-base amd64 12.1.0-2ubuntu1 [18.8 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-s1 amd64 12.1.0-2ubuntu1 [54.2 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcc1-0 amd64 12.1.0-2ubuntu1 [46.6 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++6 amd64 12.1.0-2ubuntu1 [679 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:19 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:28 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:29 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:34 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.2 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.8.3-1 [15.7 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.38.5-1 [646 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssl3 amd64 3.0.3-5ubuntu3 [1897 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main amd64 openssl amd64 3.0.3-5ubuntu3 [1175 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng16-16 amd64 1.6.37-5 [187 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 xz-utils amd64 5.2.5-2.1 [83.8 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 g++-11 amd64 11.3.0-3ubuntu1 [11.3 MB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++-11-dev amd64 11.3.0-3ubuntu1 [2074 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasan6 amd64 11.3.0-3ubuntu1 [2265 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11 amd64 11.3.0-3ubuntu1 [20.0 MB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-11-dev amd64 11.3.0-3ubuntu1 [2484 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtsan0 amd64 11.3.0-3ubuntu1 [2241 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-3ubuntu1 [9910 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-3ubuntu1 [20.8 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 27 [12.4 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-1ubuntu1 [34.5 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 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Setting up libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up gcc-11 (11.3.0-3ubuntu1) ... Setting up g++-11 (11.3.0-3ubuntu1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24076371 amd64 kinetic -c chroot:build-PACKAGEBUILD-24076371 --arch=amd64 --dist=kinetic --nolog -A snakemake_6.15.5-1.dsc Initiating build PACKAGEBUILD-24076371 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lgw01-amd64-028.buildd +==============================================================================+ | snakemake 6.15.5-1 (amd64) Thu, 23 Jun 2022 18:22:25 +0000 | +==============================================================================+ Package: snakemake Version: 6.15.5-1 Source Version: 6.15.5-1 Distribution: kinetic Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24076371/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/snakemake-VZEpPk/resolver-oe3bID' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- snakemake_6.15.5-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/snakemake-VZEpPk/snakemake-6.15.5' with '<>' I: NOTICE: Log filtering will replace 'build/snakemake-VZEpPk' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: ca-certificates, cwltool, debhelper-compat (= 13), dh-python, environment-modules, imagemagick, python3, python3-appdirs, python3-biopython, python3-boto3, python3-botocore, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-dropbox, python3-filelock, python3-flask, python3-git, python3-jinja2, python3-jsonschema, python3-nbformat, python3-networkx, python3-pandas, python3-pkg-resources, python3-psutil, python3-pulp (>= 2.0~), python3-pygments, python3-pygraphviz, python3-pytest, python3-pytools, python3-ratelimiter, python3-recommonmark, python3-requests, python3-requests-mock, python3-rpy2, python3-setuptools, python3-smart-open (>= 3.0~), python3-sphinx (>= 3.0~), python3-sphinx-argparse, python3-sphinx-bootstrap-theme, python3-sphinx-rtd-theme, python3-stopit, python3-tabulate, python3-toposort, python3-wrapt, python3-yaml, r-cran-rmarkdown, stress, build-essential, fakeroot Filtered Build-Depends: ca-certificates, cwltool, debhelper-compat (= 13), dh-python, environment-modules, imagemagick, python3, python3-appdirs, python3-biopython, python3-boto3, python3-botocore, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-dropbox, python3-filelock, python3-flask, python3-git, python3-jinja2, python3-jsonschema, python3-nbformat, python3-networkx, python3-pandas, python3-pkg-resources, python3-psutil, python3-pulp (>= 2.0~), python3-pygments, python3-pygraphviz, python3-pytest, python3-pytools, python3-ratelimiter, python3-recommonmark, python3-requests, python3-requests-mock, python3-rpy2, python3-setuptools, python3-smart-open (>= 3.0~), python3-sphinx (>= 3.0~), python3-sphinx-argparse, python3-sphinx-bootstrap-theme, python3-sphinx-rtd-theme, python3-stopit, python3-tabulate, python3-toposort, python3-wrapt, python3-yaml, r-cran-rmarkdown, stress, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [731 B] Get:5 copy:/<>/apt_archive ./ Packages [786 B] Fetched 2480 B in 0s (111 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cwltool debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz environment-modules file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-mathjax fonts-urw-base35 gettext gettext-base gir1.2-glib-2.0 git git-man graphviz groff-base hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian javascript-common less libann0 libaom3 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6 libcmark-gfm-extensions0.29.0.gfm.3 libcmark-gfm0.29.0.gfm.3 libcurl3-gnutls libcurl4 libdatrie1 libdav1d6 libde265-0 libdebhelper-perl libdeflate0 libdw1 libelf1 liberror-perl libexpat1 libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libheif1 libice6 libicu71 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjs-underscore libjson-perl liblab-gamut1 liblapack3 liblcms2-2 libldap-2.5-0 liblqr-1-0 libltdl7 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmd0 libmpdec3 libnghttp2-14 libnuma1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsodium23 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx265-199 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6 libyaml-0-2 littler m4 mailcap man-db media-types mime-support node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data po-debconf python-babel-localedata python3 python3-adal python3-aiohttp python3-aiosignal python3-alabaster python3-appdirs python3-arcp python3-argcomplete python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-babel python3-bcrypt python3-biopython python3-blinker python3-boto3 python3-botocore python3-cachecontrol python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-colorama python3-coloredlogs python3-commonmark python3-configargparse python3-connection-pool python3-cryptography python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-dropbox python3-fastjsonschema python3-filelock python3-flask python3-frozenlist python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-isodate python3-itsdangerous python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-lib2to3 python3-lockfile python3-lxml python3-markupsafe python3-minimal python3-mistune0 python3-more-itertools python3-msal python3-msal-extensions python3-msgpack python3-msrest python3-msrestazure python3-multidict python3-mypy-extensions python3-nacl python3-nbformat python3-networkx python3-numpy python3-oauthlib python3-packaging python3-pandas python3-pandas-lib python3-paramiko python3-pil python3-pkg-resources python3-pluggy python3-ply python3-portalocker python3-prov python3-psutil python3-pulp python3-py python3-pydot python3-pygments python3-pygraphviz python3-pyparsing python3-pyrsistent python3-pytest python3-pytools python3-pytz-deprecation-shim python3-ratelimiter python3-rdflib python3-recommonmark python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-mock python3-requests-oauthlib python3-roman python3-rpy2 python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-schema-salad python3-setuptools python3-shellescape python3-six python3-smart-open python3-smmap python3-snowballstemmer python3-sphinx python3-sphinx-argparse python3-sphinx-bootstrap-theme python3-sphinx-rtd-theme python3-stone python3-stopit python3-tabulate python3-toml python3-toposort python3-traitlets python3-typing-extensions python3-tz python3-tzlocal python3-uamqp python3-urllib3 python3-werkzeug python3-wrapt python3-yaml python3-yarl python3-zipp python3.10 python3.10-minimal r-base-core r-cran-base64enc r-cran-bslib r-cran-cachem r-cran-commonmark r-cran-crayon r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fastmap r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tinytex r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml sgml-base sphinx-common sphinx-rtd-theme-common stress tcl8.6 ucf unzip w3c-sgml-lib x11-common xdg-utils xml-core zip Suggested packages: autoconf-archive gnu-standards autoconf-doc podman | docker.io | singularity-container dh-make flit python3-build python3-tomli python3-installer fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev git-daemon-run | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn gsfonts graphviz-doc groff imagemagick-doc autotrace cups-bsd | lpr | lprng curl enscript ffmpeg gimp gnuplot grads hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig ufraw-batch apache2 | lighttpd | httpd libfftw3-bin libfftw3-dev libgd-tools libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils libmagickcore-6.q16-6-extra tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor www-browser nodejs texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc php python ruby libjs-katex citation-style-language-styles libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc python-azure-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-psycopg2 python3-scipy raxml samtools t-coffee wise python-blinker-doc python-cryptography-doc python3-cryptography-vectors docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base python-fastjsonschema-doc python3-asgiref python3-dotenv python-flask-doc python-git-doc python-jinja2-doc python-jsonschema-doc python3-pip python3-crypto python-lockfile-doc python-lxml-doc python-nacl-doc python-networkx-doc python3-gdal gfortran python-numpy-doc python3-dev python-pandas-doc python3-statsmodels python3-gssapi python3-invoke python-pil-doc python-ply-doc python-prov-doc python-psutil-doc subversion python-pygments-doc ttf-bitstream-vera python-pygraphviz-doc python-pyparsing-doc python-rdflib-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-openssl python3-socks python-requests-doc python-rpy-docs python-setuptools-doc python3-nose python3-stemmer dvipng fonts-freefont-otf latexmk sphinx-doc tex-gyre texlive-fonts-recommended texlive-plain-generic python3-brotli ipython3 python-werkzeug-doc python3-watchdog python3.10-venv python3.10-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-curl r-cran-testthat r-cran-xml2 r-cran-rstudioapi r-cran-covr r-cran-ggplot2 r-cran-lattice r-cran-spelling r-cran-dbi r-cran-dplyr r-cran-forcats r-cran-r.utils r-cran-rsqlite r-cran-waldo r-cran-markdown r-cran-cairo r-cran-ragg r-cran-callr r-cran-httr r-cran-vctrs r-cran-r.rsp r-cran-sf r-cran-formatr r-cran-rgl r-cran-htmlwidgets r-cran-webshot r-cran-reticulate r-cran-magick r-cran-png r-cran-jpeg r-cran-tidyverse r-cran-tibble r-cran-getopt r-cran-purrr r-cran-roxygen2 r-cran-inline r-cran-cli r-cran-pillar r-cran-usethis r-cran-downlit r-cran-codetools r-cran-remotes r-cran-plm r-cran-zoo r-cran-survival r-cran-runit sgml-base-doc tcl-tclreadline Recommended packages: nodejs curl | wget | lynx ssh-client fonts-liberation2 libmagickcore-6.q16-6-extra ghostscript netpbm libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin node-jquery libjson-xs-perl libldap-common gsfonts publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-simplejson python3-bs4 python3-html5lib python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-tables python3-numba python3-olefile python3-sparqlwrapper black python3-openssl python3-pyinotify r-recommended r-base-dev r-doc-html r-cran-thematic r-cran-testthat r-cran-curl r-cran-mockery r-cran-vctrs r-cran-tibble r-cran-pillar r-cran-covr r-cran-testit r-cran-markdown r-cran-sp r-cran-tikzdevice r-cran-codetools node-highlight.js r-cran-future r-cran-tufte r-cran-dygraphs r-cran-rsconnect r-cran-ggplot2 r-cran-htmlwidgets r-cran-dbi r-cran-rsqlite r-cran-lattice libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils coinor-cbc coinor-libcbc3 coinor-libcgl1 coinor-libclp1 coinor-libcoinutils3v5 coinor-libosi1v5 cwltool debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz environment-modules file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-mathjax fonts-urw-base35 gettext gettext-base gir1.2-glib-2.0 git git-man graphviz groff-base hicolor-icon-theme imagemagick imagemagick-6-common imagemagick-6.q16 intltool-debian javascript-common less libann0 libaom3 libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libcdt5 libcgraph6 libcmark-gfm-extensions0.29.0.gfm.3 libcmark-gfm0.29.0.gfm.3 libcurl3-gnutls libcurl4 libdatrie1 libdav1d6 libde265-0 libdebhelper-perl libdeflate0 libdw1 libelf1 liberror-perl libexpat1 libfftw3-double3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libgirepository-1.0-1 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libheif1 libice6 libicu71 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjs-underscore libjson-perl liblab-gamut1 liblapack3 liblcms2-2 libldap-2.5-0 liblqr-1-0 libltdl7 libmagic-mgc libmagic1 libmagickcore-6.q16-6 libmagickwand-6.q16-6 libmd0 libmpdec3 libnghttp2-14 libnuma1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpipeline1 libpixman-1-0 libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsodium23 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx265-199 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6 libyaml-0-2 littler m4 mailcap man-db media-types mime-support node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data po-debconf python-babel-localedata python3 python3-adal python3-aiohttp python3-aiosignal python3-alabaster python3-appdirs python3-arcp python3-argcomplete python3-async-timeout python3-attr python3-avro python3-azure python3-azure-storage python3-babel python3-bcrypt python3-biopython python3-blinker python3-boto3 python3-botocore python3-cachecontrol python3-certifi python3-cffi-backend python3-chardet python3-charset-normalizer python3-click python3-colorama python3-coloredlogs python3-commonmark python3-configargparse python3-connection-pool python3-cryptography python3-dateutil python3-datrie python3-decorator python3-distutils python3-docutils python3-dropbox python3-fastjsonschema python3-filelock python3-flask python3-frozenlist python3-gi python3-git python3-gitdb python3-humanfriendly python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-isodate python3-itsdangerous python3-jinja2 python3-jmespath python3-jsonschema python3-jupyter-core python3-jwt python3-lib2to3 python3-lockfile python3-lxml python3-markupsafe python3-minimal python3-mistune0 python3-more-itertools python3-msal python3-msal-extensions python3-msgpack python3-msrest python3-msrestazure python3-multidict python3-mypy-extensions python3-nacl python3-nbformat python3-networkx python3-numpy python3-oauthlib python3-packaging python3-pandas python3-pandas-lib python3-paramiko python3-pil python3-pkg-resources python3-pluggy python3-ply python3-portalocker python3-prov python3-psutil python3-pulp python3-py python3-pydot python3-pygments python3-pygraphviz python3-pyparsing python3-pyrsistent python3-pytest python3-pytools python3-pytz-deprecation-shim python3-ratelimiter python3-rdflib python3-recommonmark python3-renderpm python3-reportlab python3-reportlab-accel python3-requests python3-requests-mock python3-requests-oauthlib python3-roman python3-rpy2 python3-ruamel.yaml python3-ruamel.yaml.clib python3-s3transfer python3-schema-salad python3-setuptools python3-shellescape python3-six python3-smart-open python3-smmap python3-snowballstemmer python3-sphinx python3-sphinx-argparse python3-sphinx-bootstrap-theme python3-sphinx-rtd-theme python3-stone python3-stopit python3-tabulate python3-toml python3-toposort python3-traitlets python3-typing-extensions python3-tz python3-tzlocal python3-uamqp python3-urllib3 python3-werkzeug python3-wrapt python3-yaml python3-yarl python3-zipp python3.10 python3.10-minimal r-base-core r-cran-base64enc r-cran-bslib r-cran-cachem r-cran-commonmark r-cran-crayon r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fastmap r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tinytex r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml sbuild-build-depends-main-dummy sgml-base sphinx-common sphinx-rtd-theme-common stress tcl8.6 ucf unzip w3c-sgml-lib x11-common xdg-utils xml-core zip 0 upgraded, 377 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu kinetic/main amd64 libyaml-0-2 amd64 0.2.2-1build2 [51.6 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-gi amd64 3.42.1-1 [229 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-pkg-resources all 59.6.0-1.2 [132 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-yaml amd64 5.4.1-1ubuntu1 [129 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdextrautils amd64 2.38-4ubuntu1 [71.1 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic-mgc amd64 1:5.41-4 [257 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic1 amd64 1:5.41-4 [87.3 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 file amd64 1:5.41-4 [21.5 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext-base amd64 0.21-6 [37.9 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 groff-base amd64 1.22.4-8build1 [955 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 libnghttp2-14 amd64 1.47.0-1 [69.0 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpipeline1 amd64 1.5.6-1 [23.1 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpsl5 amd64 0.21.0-1.2build2 [58.4 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuv1 amd64 1.44.1-2 [93.1 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 man-db amd64 2.10.2-1 [1187 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsigsegv2 amd64 2.13-1ubuntu3 [14.6 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 m4 amd64 1.4.18-5ubuntu2 [199 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 autoconf all 2.71-2 [338 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 autopoint all 0.21-6 [421 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-more-itertools all 8.10.0-2 [47.9 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-zipp all 1.0.0-4 [5548 B] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-importlib-metadata all 4.6.4-1 [16.2 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-argcomplete all 2.0.0-1ubuntu1 [31.4 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-humanfriendly all 10.0-1 [70.4 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-coloredlogs all 7.3-3 [28.6 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-mypy-extensions all 0.4.3-3 [5830 B] Get:90 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-six all 1.16.0-3ubuntu1 [12.6 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-dateutil all 2.8.1-6 [78.4 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxslt1.1 amd64 1.1.34-4build2 [164 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-lxml amd64 4.8.0-1build1 [1150 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-networkx all 2.4-4ubuntu2 [872 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-isodate all 0.6.1-1 [24.7 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-pyparsing all 3.0.7-2 [82.6 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-rdflib all 6.1.1-1 [363 kB] Get:99 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-prov all 2.0.0-2 [96.3 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-psutil amd64 5.9.0-1build1 [158 kB] Get:101 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libann0 amd64 1.1.2+doc-7build1 [26.0 kB] Get:102 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcdt5 amd64 2.42.2-7 [20.9 kB] Get:103 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcgraph6 amd64 2.42.2-7 [44.6 kB] Get:104 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxpm4 amd64 1:3.5.12-1build2 [36.2 kB] Get:105 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgd3 amd64 2.3.0-2ubuntu2 [129 kB] Get:106 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-5 [164 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpixman-1-0 amd64 0.40.0-1build4 [264 kB] Get:108 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-render0 amd64 1.14-3ubuntu3 [16.4 kB] Get:109 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-shm0 amd64 1.14-3ubuntu3 [5780 B] Get:110 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] Get:111 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcairo2 amd64 1.16.0-5ubuntu2 [628 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main amd64 fontconfig amd64 2.13.1-4.4ubuntu1 [176 kB] Get:113 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgraphite2-3 amd64 1.3.14-1build2 [71.3 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu4 [352 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main amd64 libthai-data all 0.1.29-1build1 [162 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdatrie1 amd64 0.2.13-2 [19.9 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main amd64 libthai0 amd64 0.1.29-1build1 [19.2 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpango-1.0-0 amd64 1.50.7+ds-1 [224 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpangoft2-1.0-0 amd64 1.50.7+ds-1 [52.0 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpangocairo-1.0-0 amd64 1.50.7+ds-1 [38.2 kB] Get:121 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libpathplan4 amd64 2.42.2-7 [23.2 kB] Get:122 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libgvc6 amd64 2.42.2-7 [708 kB] Get:123 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libgvpr2 amd64 2.42.2-7 [186 kB] Get:124 http://ftpmaster.internal/ubuntu kinetic/universe amd64 liblab-gamut1 amd64 2.42.2-7 [1909 kB] Get:125 http://ftpmaster.internal/ubuntu kinetic/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:126 http://ftpmaster.internal/ubuntu kinetic/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] Get:127 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] Get:128 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxt6 amd64 1:1.2.1-1 [177 kB] Get:129 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] Get:130 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] Get:131 http://ftpmaster.internal/ubuntu kinetic/universe amd64 graphviz amd64 2.42.2-7 [635 kB] Get:132 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-pydot all 1.4.2-1build1 [25.8 kB] Get:133 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-certifi all 2020.6.20-1 [150 kB] Get:134 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-chardet all 4.0.0-2 [109 kB] Get:135 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-idna all 3.3-1 [49.3 kB] Get:136 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-urllib3 all 1.26.9-1 [98.8 kB] Get:137 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-requests all 2.27.1+dfsg-1ubuntu2 [50.3 kB] Get:138 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-ruamel.yaml.clib amd64 0.2.6-1build1 [134 kB] Get:139 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-ruamel.yaml all 0.17.16-1 [86.3 kB] Get:140 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-msgpack amd64 1.0.3-1build1 [67.8 kB] Get:141 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-cachecontrol all 0.12.11-1 [18.4 kB] Get:142 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-lockfile all 1:0.12.2-2.2 [14.6 kB] Get:143 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-mistune0 all 0.8.4-2 [13.8 kB] Get:144 http://ftpmaster.internal/ubuntu kinetic/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [117 kB] Get:145 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-bootstrap all 3.4.1+dfsg-2 [124 kB] Get:146 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-schema-salad all 8.2.20220204150214-1 [317 kB] Get:147 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-shellescape all 3.4.1-5 [5064 B] Get:148 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-typing-extensions all 3.10.0.2-1 [35.7 kB] Get:149 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-arcp all 0.2.1-4 [13.6 kB] Get:150 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-lib2to3 all 3.10.4-0ubuntu2 [76.0 kB] Get:151 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-distutils all 3.10.4-0ubuntu2 [138 kB] Get:152 http://ftpmaster.internal/ubuntu kinetic/universe amd64 cwltool all 3.1.20220224085855-1 [468 kB] Get:153 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdebhelper-perl all 13.7.1ubuntu1 [66.9 kB] Get:154 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtool all 2.4.7-4 [166 kB] Get:155 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-autoreconf all 20 [16.1 kB] Get:156 http://ftpmaster.internal/ubuntu kinetic/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:157 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-override-perl all 0.09-3 [9756 B] Get:158 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:159 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:160 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdw1 amd64 0.187-1 [247 kB] Get:161 http://ftpmaster.internal/ubuntu kinetic/main amd64 debugedit amd64 1:5.0-4build1 [47.2 kB] Get:162 http://ftpmaster.internal/ubuntu kinetic/main amd64 dwz amd64 0.14-1build2 [105 kB] Get:163 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext amd64 0.21-6 [862 kB] Get:164 http://ftpmaster.internal/ubuntu kinetic/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:165 http://ftpmaster.internal/ubuntu kinetic/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:166 http://ftpmaster.internal/ubuntu kinetic/main amd64 debhelper all 13.7.1ubuntu1 [940 kB] Get:167 http://ftpmaster.internal/ubuntu kinetic/universe amd64 dh-python all 5.20220403 [106 kB] Get:168 http://ftpmaster.internal/ubuntu kinetic/main amd64 xml-core all 0.18+nmu1 [21.6 kB] Get:169 http://ftpmaster.internal/ubuntu kinetic/main amd64 docutils-common all 0.17.1+dfsg-2 [117 kB] Get:170 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtcl8.6 amd64 8.6.12+dfsg-1build1 [990 kB] Get:171 http://ftpmaster.internal/ubuntu kinetic/main amd64 tcl8.6 amd64 8.6.12+dfsg-1build1 [15.0 kB] Get:172 http://ftpmaster.internal/ubuntu kinetic/universe amd64 environment-modules amd64 5.1.1-1 [277 kB] Get:173 http://ftpmaster.internal/ubuntu kinetic/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:174 http://ftpmaster.internal/ubuntu kinetic/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:175 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-6ubuntu1 [20.5 kB] Get:176 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsasl2-2 amd64 2.1.28+dfsg-6ubuntu1 [55.9 kB] Get:177 http://ftpmaster.internal/ubuntu kinetic/main amd64 libldap-2.5-0 amd64 2.5.12+dfsg-2ubuntu1 [180 kB] Get:178 http://ftpmaster.internal/ubuntu kinetic/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build4 [58.2 kB] Get:179 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssh-4 amd64 0.9.6-2build1 [184 kB] Get:180 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcurl3-gnutls amd64 7.83.1-2 [280 kB] Get:181 http://ftpmaster.internal/ubuntu kinetic/main amd64 liberror-perl all 0.17029-1 [26.5 kB] Get:182 http://ftpmaster.internal/ubuntu kinetic/main amd64 git-man all 1:2.36.1-1ubuntu1 [965 kB] Get:183 http://ftpmaster.internal/ubuntu kinetic/main amd64 git amd64 1:2.36.1-1ubuntu1 [3198 kB] Get:184 http://ftpmaster.internal/ubuntu kinetic/main amd64 hicolor-icon-theme all 0.17-2 [9976 B] Get:185 http://ftpmaster.internal/ubuntu kinetic/universe amd64 imagemagick-6.q16 amd64 8:6.9.11.60+dfsg-1.3build2 [224 kB] Get:186 http://ftpmaster.internal/ubuntu kinetic/universe amd64 imagemagick amd64 8:6.9.11.60+dfsg-1.3build2 [14.6 kB] Get:187 http://ftpmaster.internal/ubuntu kinetic/main amd64 javascript-common all 11+nmu1 [5936 B] Get:188 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblas3 amd64 3.10.1-2 [228 kB] Get:189 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcmark-gfm0.29.0.gfm.3 amd64 0.29.0.gfm.3-3 [115 kB] Get:190 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcmark-gfm-extensions0.29.0.gfm.3 amd64 0.29.0.gfm.3-3 [25.1 kB] Get:191 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcurl4 amd64 7.83.1-2 [285 kB] Get:192 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgfortran5 amd64 12.1.0-2ubuntu1 [875 kB] Get:193 http://ftpmaster.internal/ubuntu kinetic/main amd64 libimagequant0 amd64 2.17.0-1 [34.6 kB] Get:194 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-popper.js all 1.16.1+ds-5 [53.8 kB] Get:195 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-3 [539 kB] Get:196 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:197 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-es5-shim all 4.6.7-1 [39.8 kB] Get:198 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] Get:199 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:200 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] Get:201 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-sifter.js all 0.6.0+dfsg-2 [12.8 kB] Get:202 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] Get:203 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] Get:204 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-jquery-ui all 1.13.1+dfsg-1 [253 kB] Get:205 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-json all 0~20210531+~1.0.8-1 [20.5 kB] Get:206 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] Get:207 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjs-underscore all 1.13.3~dfsg+~1.11.4-1 [118 kB] Get:208 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjs-sphinxdoc all 4.5.0-4 [142 kB] Get:209 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjson-perl all 4.06000-1 [82.0 kB] Get:210 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblapack3 amd64 3.10.1-2 [2492 kB] Get:211 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpaper1 amd64 1.1.28build2 [13.8 kB] Get:212 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpaper-utils amd64 1.1.28build2 [8674 B] Get:213 http://ftpmaster.internal/ubuntu kinetic/main amd64 libraqm0 amd64 0.7.0-4ubuntu1 [11.7 kB] Get:214 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsodium23 amd64 1.0.18-1build2 [164 kB] Get:215 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxft2 amd64 2.3.4-1 [41.8 kB] Get:216 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] Get:217 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtk8.6 amd64 8.6.12-1build1 [784 kB] Get:218 http://ftpmaster.internal/ubuntu kinetic/main amd64 zip amd64 3.0-12build2 [176 kB] Get:219 http://ftpmaster.internal/ubuntu kinetic/main amd64 unzip amd64 6.0-26ubuntu3 [174 kB] Get:220 http://ftpmaster.internal/ubuntu kinetic/main amd64 xdg-utils all 1.1.3-4.1ubuntu2 [62.0 kB] Get:221 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-base-core amd64 4.2.0-1ubuntu1 [28.3 MB] Get:222 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-littler amd64 0.3.15-1 [90.5 kB] Get:223 http://ftpmaster.internal/ubuntu kinetic/universe amd64 littler all 0.3.15-1 [2264 B] Get:224 http://ftpmaster.internal/ubuntu kinetic/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] Get:225 http://ftpmaster.internal/ubuntu kinetic/universe amd64 node-html5shiv all 3.7.3+dfsg-4 [13.6 kB] Get:226 http://ftpmaster.internal/ubuntu kinetic/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] Get:227 http://ftpmaster.internal/ubuntu kinetic/universe amd64 pandoc-data all 2.9.2.1-3ubuntu2 [81.8 kB] Get:228 http://ftpmaster.internal/ubuntu kinetic/universe amd64 pandoc amd64 2.9.2.1-3ubuntu2 [20.3 MB] Get:229 http://ftpmaster.internal/ubuntu kinetic/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4982 kB] Get:230 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-cffi-backend amd64 1.15.0-1build2 [77.4 kB] Get:231 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-cryptography amd64 3.4.8-2 [228 kB] Get:232 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-jwt all 2.3.0-1 [16.3 kB] Get:233 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-adal all 1.2.7-1 [33.1 kB] Get:234 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-multidict amd64 5.1.0-2 [38.4 kB] Get:235 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-yarl amd64 1.7.2-1build1 [47.6 kB] Get:236 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-async-timeout all 4.0.1-1 [6546 B] Get:237 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-frozenlist amd64 1.2.0-1build1 [66.3 kB] Get:238 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-aiosignal all 1.2.0-2 [5646 B] Get:239 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-attr all 21.2.0-1 [44.0 kB] Get:240 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-charset-normalizer all 2.0.6-2 [32.2 kB] Get:241 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-aiohttp amd64 3.8.1-4build1 [255 kB] Get:242 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-appdirs all 1.4.4-2 [11.4 kB] Get:243 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-avro all 1.11.0+dfsg-1 [68.6 kB] Get:244 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-blinker all 1.4+dfsg1-0.5 [14.0 kB] Get:245 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-oauthlib all 3.2.0-1 [89.7 kB] Get:246 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-requests-oauthlib all 1.3.0+ds-0.1 [18.7 kB] Get:247 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-msrest all 0.6.21-2 [48.8 kB] Get:248 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-msrestazure all 0.6.4-1 [27.3 kB] Get:249 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-msal all 1.18.0b1-1 [71.8 kB] Get:250 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-portalocker all 2.2.1-1 [17.2 kB] Get:251 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-msal-extensions all 1.0.0-1 [17.2 kB] Get:252 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-uamqp amd64 1.5.3-1 [665 kB] Get:253 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-azure all 20220407+git-1 [7939 kB] Get:254 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-azure-storage all 20220407+git-1 [255 kB] Get:255 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-tz all 2022.1-1 [33.3 kB] Get:256 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-babel all 2.8.0+dfsg.1-7 [85.1 kB] Get:257 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-numpy amd64 1:1.21.5-1build2 [3464 kB] Get:258 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-renderpm amd64 3.6.9-1 [63.7 kB] Get:259 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-reportlab-accel amd64 3.6.9-1 [21.0 kB] Get:260 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-pil amd64 9.1.1-1 [418 kB] Get:261 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-reportlab all 3.6.9-1 [558 kB] Get:262 http://ftpmaster.internal/ubuntu kinetic/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] Get:263 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-biopython amd64 1.79+dfsg-3 [1469 kB] Get:264 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-jmespath all 1.0.0-1 [21.6 kB] Get:265 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-botocore all 1.26.8+repack-1 [4665 kB] Get:266 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-s3transfer all 0.5.2-1 [51.7 kB] Get:267 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-boto3 all 1.23.8+dfsg-1 [68.6 kB] Get:268 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-colorama all 0.4.5-1 [25.2 kB] Get:269 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-click all 8.0.3-1 [78.3 kB] Get:270 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-commonmark all 0.9.1-4 [45.8 kB] Get:271 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-configargparse all 1.5.3-1 [26.9 kB] Get:272 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-connection-pool all 0.0.3-2 [5628 B] Get:273 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-datrie amd64 0.8.2-2 [104 kB] Get:274 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-roman all 3.3-1 [10.6 kB] Get:275 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-docutils all 0.17.1+dfsg-2 [387 kB] Get:276 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-ply all 3.11-5 [47.5 kB] Get:277 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-stone all 3.3.1-1 [119 kB] Get:278 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-dropbox all 11.30.0-1 [407 kB] Get:279 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-fastjsonschema all 2.15.1-2 [17.5 kB] Get:280 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-filelock all 3.7.1-1 [8914 B] Get:281 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-itsdangerous all 2.1.2-1 [14.6 kB] Get:282 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-markupsafe amd64 2.0.1-2build1 [12.7 kB] Get:283 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-jinja2 all 3.0.3-1 [108 kB] Get:284 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-werkzeug all 2.0.2+dfsg1-1 [180 kB] Get:285 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-flask all 2.0.1-2ubuntu1 [81.5 kB] Get:286 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-smmap all 5.0.0-1 [21.0 kB] Get:287 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-gitdb all 4.0.9-1 [46.5 kB] Get:288 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-git all 3.1.27-1 [131 kB] Get:289 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-imagesize all 1.3.0-1 [6458 B] Get:290 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] Get:291 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-setuptools all 59.6.0-1.2 [339 kB] Get:292 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-pyrsistent amd64 0.18.1-1build1 [55.5 kB] Get:293 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-jsonschema all 3.2.0-0ubuntu2 [43.1 kB] Get:294 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-traitlets all 5.3.0-1 [85.5 kB] Get:295 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-jupyter-core all 4.10.0-1 [20.4 kB] Get:296 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-nacl amd64 1.5.0-2 [63.1 kB] Get:297 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-nbformat all 5.4.0-2 [35.3 kB] Get:298 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-packaging all 21.3-1 [30.7 kB] Get:299 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-pandas-lib amd64 1.3.5+dfsg-4 [3690 kB] Get:300 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-pandas all 1.3.5+dfsg-4 [2678 kB] Get:301 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-bcrypt amd64 3.2.0-1build1 [32.7 kB] Get:302 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-paramiko all 2.10.4-1ubuntu1 [134 kB] Get:303 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-pluggy all 1.0.0-1 [15.1 kB] Get:304 http://ftpmaster.internal/ubuntu kinetic/universe amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-2 [465 kB] Get:305 http://ftpmaster.internal/ubuntu kinetic/universe amd64 coinor-libosi1v5 amd64 0.108.6+repack1-2 [275 kB] Get:306 http://ftpmaster.internal/ubuntu kinetic/universe amd64 coinor-libclp1 amd64 1.17.6-1 [876 kB] Get:307 http://ftpmaster.internal/ubuntu kinetic/universe amd64 coinor-libcgl1 amd64 0.60.3+repack1-4 [419 kB] Get:308 http://ftpmaster.internal/ubuntu kinetic/universe amd64 coinor-libcbc3 amd64 2.10.8+ds1-1 [787 kB] Get:309 http://ftpmaster.internal/ubuntu kinetic/universe amd64 coinor-cbc amd64 2.10.8+ds1-1 [11.3 kB] Get:310 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-pulp all 2.6.0+dfsg-1 [65.0 kB] Get:311 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-py all 1.10.0-1 [71.9 kB] Get:312 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-pygments all 2.11.2+dfsg-2 [750 kB] Get:313 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-pygraphviz amd64 1.7-3build1 [78.9 kB] Get:314 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] Get:315 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-pytest all 6.2.5-3ubuntu1 [214 kB] Get:316 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-pytools all 2021.2.8-1 [48.2 kB] Get:317 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-pytz-deprecation-shim all 0.1.0.post0-2 [14.4 kB] Get:318 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-ratelimiter amd64 1.2.0.post0-2 [5730 B] Get:319 http://ftpmaster.internal/ubuntu kinetic/main amd64 sphinx-common all 4.5.0-4 [679 kB] Get:320 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-alabaster all 0.7.12-1 [17.8 kB] Get:321 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-snowballstemmer all 2.2.0-1build1 [60.2 kB] Get:322 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-sphinx all 4.5.0-4 [546 kB] Get:323 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-recommonmark all 0.7.1+ds-1 [17.2 kB] Get:324 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-requests-mock all 1.9.3-2 [16.6 kB] Get:325 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-tzlocal all 4.2-1 [21.5 kB] Get:326 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-rpy2 amd64 3.5.2-1 [197 kB] Get:327 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-smart-open all 5.2.1-4 [81.6 kB] Get:328 http://ftpmaster.internal/ubuntu kinetic/main amd64 sphinx-rtd-theme-common all 1.0.0+dfsg-1 [991 kB] Get:329 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-sphinx-argparse all 0.3.1-1 [35.5 kB] Get:330 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-sphinx-bootstrap-theme all 0.8.1-1 [430 kB] Get:331 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-sphinx-rtd-theme all 1.0.0+dfsg-1 [21.3 kB] Get:332 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-stopit all 1.1.2-2 [12.5 kB] Get:333 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-tabulate all 0.8.9-0ubuntu1 [35.0 kB] Get:334 http://ftpmaster.internal/ubuntu kinetic/universe amd64 python3-toposort all 1.6-1 [6868 B] Get:335 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-wrapt amd64 1.13.3-1build1 [34.0 kB] Get:336 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] Get:337 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-digest amd64 0.6.29-1 [186 kB] Get:338 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rlang amd64 1.0.2-1 [1579 kB] Get:339 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-fastmap amd64 1.1.0-1 [64.8 kB] Get:340 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-htmltools amd64 0.5.2-1 [348 kB] Get:341 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-jsonlite amd64 1.8.0+dfsg-1 [436 kB] Get:342 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-fs amd64 1.5.2+dfsg-1 [228 kB] Get:343 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] Get:344 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] Get:345 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-sass amd64 0.4.1+dfsg-1 [988 kB] Get:346 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-3 [13.3 kB] Get:347 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-bslib all 0.3.1+dfsg-2 [3695 kB] Get:348 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-cachem amd64 1.0.6-1 [70.5 kB] 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1.3.0+dfsg-1 [109 kB] Get:359 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] Get:360 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-promises amd64 1.2.0.1+dfsg-1 [273 kB] Get:361 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-httpuv amd64 1.6.5+dfsg-1 [499 kB] Get:362 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-stringi amd64 1.7.6-1build2 [826 kB] Get:363 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-stringr all 1.4.0-2build1 [192 kB] Get:364 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-yaml amd64 2.3.5-1 [108 kB] Get:365 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] Get:366 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-knitr all 1.39+dfsg-1 [874 kB] Get:367 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-lifecycle all 1.0.1-1 [105 kB] Get:368 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] Get:369 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-tinytex all 0.39-1 [134 kB] Get:370 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-modernizr all 2.6.2+ds1-4 [47.1 kB] Get:371 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:372 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-sourcetools amd64 0.1.7-3 [45.4 kB] Get:373 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] Get:374 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] Get:375 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-shiny all 1.6.0+dfsg-1 [3675 kB] Get:376 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rmarkdown all 2.14+dfsg-2 [2318 kB] Get:377 http://ftpmaster.internal/ubuntu kinetic/universe amd64 stress amd64 1.0.5-1 [18.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 194 MB in 9s (22.1 MB/s) Selecting previously unselected package libpython3.10-minimal:amd64. (Reading database ... 13498 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.5-1_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.5-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.4.8-1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.5-1_amd64.deb ... Unpacking python3.10-minimal (3.10.5-1) ... Setting up libpython3.10-minimal:amd64 (3.10.5-1) ... Setting up libexpat1:amd64 (2.4.8-1) ... Setting up python3.10-minimal (3.10.5-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13800 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.4-0ubuntu2_amd64.deb ... Unpacking python3-minimal (3.10.4-0ubuntu2) ... Selecting previously unselected package media-types. 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../365-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (8.0.0) ... Setting up libpipeline1:amd64 (1.5.6-1) ... Setting up libjs-json (0~20210531+~1.0.8-1) ... Setting up javascript-common (11+nmu1) ... Setting up libgraphite2-3:amd64 (1.3.14-1build2) ... Setting up liblcms2-2:amd64 (2.12~rc1-2build2) ... Setting up libpixman-1-0:amd64 (0.40.0-1build4) ... Setting up libicu71:amd64 (71.1-3) ... Setting up libaom3:amd64 (3.4.0-1) ... Setting up libxau6:amd64 (1:1.0.9-1build5) ... Setting up imagemagick-6-common (8:6.9.11.60+dfsg-1.3build2) ... Setting up libpsl5:amd64 (0.21.0-1.2build2) ... Setting up fonts-lato (2.0-2.1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libsodium23:amd64 (1.0.18-1build2) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libdatrie1:amd64 (0.2.13-2) ... Setting up libjs-popper.js (1.16.1+ds-5) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1build2) ... Setting up libglib2.0-0:amd64 (2.72.2-2) ... No schema files found: doing nothing. Setting up libjs-sifter.js (0.6.0+dfsg-2) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up stress (1.0.5-1) ... Setting up unzip (6.0-26ubuntu3) ... Setting up libdebhelper-perl (13.7.1ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build6) ... Setting up liblab-gamut1:amd64 (2.42.2-7) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up node-html5shiv (3.7.3+dfsg-4) ... Setting up libnghttp2-14:amd64 (1.47.0-1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up libdeflate0:amd64 (1.10-2) ... Setting up less (590-1build1) ... Setting up gettext-base (0.21-6) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up file (1:5.41-4) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libjs-modernizr (2.6.2+ds1-4) ... Setting up libjbig0:amd64 (2.1-3.1build3) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up libjs-es5-shim (4.6.7-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-6ubuntu1) ... Setting up liberror-perl (0.17029-1) ... Setting up libgts-0.7-5:amd64 (0.7.6+darcs121130-5) ... Setting up zip (3.0-12build2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.44.1-2) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libx11-data (2:1.7.5-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libpathplan4:amd64 (2.42.2-7) ... Setting up libann0 (1.1.2+doc-7build1) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu3) ... Setting up libfribidi0:amd64 (1.0.8-2ubuntu3.1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libtcl8.6:amd64 (8.6.12+dfsg-1build1) ... Setting up autopoint (0.21-6) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:amd64 (2.1.2-0ubuntu1) ... Setting up libdav1d6:amd64 (1.0.0-2) ... Setting up libltdl7:amd64 (2.4.7-4) ... Setting up libfftw3-double3:amd64 (3.3.8-2ubuntu8) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-6ubuntu1) ... Setting up libssh-4:amd64 (0.9.6-2build1) ... Setting up libgfortran5:amd64 (12.1.0-2ubuntu1) ... Setting up libwebp7:amd64 (1.2.2-2) ... Setting up libnuma1:amd64 (2.0.14-3ubuntu2) ... Setting up libcmark-gfm0.29.0.gfm.3:amd64 (0.29.0.gfm.3-3) ... Setting up libmd0:amd64 (1.0.4-1build1) ... Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... Setting up liblqr-1-0:amd64 (0.4.2-2.1) ... Setting up libuchardet0:amd64 (0.0.7-1build2) ... Setting up libjson-perl (4.06000-1) ... Setting up libmpdec3:amd64 (2.5.1-2build2) ... Setting up libopenjp2-7:amd64 (2.4.0-6) ... Setting up libsub-override-perl (0.09-3) ... Setting up git-man (1:2.36.1-1ubuntu1) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu4) ... Setting up libcmark-gfm-extensions0.29.0.gfm.3:amd64 (0.29.0.gfm.3-3) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libgirepository-1.0-1:amd64 (1.72.0-1) ... Setting up node-bootstrap-sass (3.4.3-2) ... Setting up sgml-base (1.30) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libcdt5:amd64 (2.42.2-7) ... Setting up libcgraph6:amd64 (2.42.2-7) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-3) ... Setting up pandoc-data (2.9.2.1-3ubuntu2) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up libde265-0:amd64 (1.0.8-1) ... Setting up libwebpmux3:amd64 (1.2.2-2) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up node-normalize.css (8.0.1-5) ... Setting up mailcap (3.70+nmu1ubuntu1) ... Setting up libelf1:amd64 (0.187-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (1.0.0+dfsg-1) ... Setting up xdg-utils (1.1.3-4.1ubuntu2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libjs-underscore (1.13.3~dfsg+~1.11.4-1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjpeg8:amd64 (8c-2ubuntu10) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libpaper1:amd64 (1.1.28build2) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1build2) ... Setting up libdw1:amd64 (0.187-1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu5) ... Setting up tcl8.6 (8.6.12+dfsg-1build1) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3ubuntu3) ... Setting up gettext (0.21-6) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.7-4) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu3) ... Setting up fontconfig-config (2.13.1-4.4ubuntu1) ... Setting up libwebpdemux2:amd64 (1.2.2-2) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu3) ... Setting up libpaper-utils (1.1.28build2) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2ubuntu1) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:amd64 (3.10.5-1) ... Setting up coinor-libcoinutils3v5:amd64 (2.11.4+repack1-2) ... Setting up libthai0:amd64 (0.1.29-1build1) ... Setting up libjs-jquery-ui (1.13.1+dfsg-1) ... Setting up pandoc (2.9.2.1-3ubuntu2) ... Setting up libraqm0:amd64 (0.7.0-4ubuntu1) ... Setting up gir1.2-glib-2.0:amd64 (1.72.0-1) ... Setting up libjs-sphinxdoc (4.5.0-4) ... Setting up coinor-libosi1v5:amd64 (0.108.6+repack1-2) ... Setting up autoconf (2.71-2) ... Setting up libx265-199:amd64 (3.5-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libgvpr2:amd64 (2.42.2-7) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:amd64 (1.1.34-4build2) ... Setting up debugedit (1:5.0-4build1) ... Setting up libcurl4:amd64 (7.83.1-2) ... Setting up libx11-6:amd64 (2:1.7.5-1) ... Setting up libtiff5:amd64 (4.4.0~rc1-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.4ubuntu1) ... Setting up libsm6:amd64 (2:1.2.3-1build2) ... Setting up libpython3-stdlib:amd64 (3.10.4-0ubuntu2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.4ubuntu1) ... Regenerating fonts cache... done. Setting up python3.10 (3.10.5-1) ... Setting up libxpm4:amd64 (1:3.5.12-1build2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libheif1:amd64 (1.12.0-2build3) ... Setting up libxext6:amd64 (2:1.3.4-1build1) ... Setting up libcurl3-gnutls:amd64 (7.83.1-2) ... Setting up python3 (3.10.4-0ubuntu2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-markupsafe (2.0.1-2build1) ... Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ... Setting up python3-psutil (5.9.0-1build1) ... Setting up python3-multidict (5.1.0-2) ... Setting up python3-tz (2022.1-1) ... Setting up python3-frozenlist (1.2.0-1build1) ... Setting up python3-aiosignal (1.2.0-2) ... Setting up python3-ratelimiter (1.2.0.post0-2) ... Setting up python3-six (1.16.0-3ubuntu1) ... Setting up dh-autoreconf (20) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-pil:amd64 (9.1.1-1) ... Setting up libmagickcore-6.q16-6:amd64 (8:6.9.11.60+dfsg-1.3build2) ... Setting up python3-roman (3.3-1) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-pyparsing (3.0.7-2) ... Setting up python3-humanfriendly (10.0-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-sphinx-bootstrap-theme (0.8.1-1) ... Setting up python3-snowballstemmer (2.2.0-1build1) ... Setting up python3-avro (1.11.0+dfsg-1) ... Setting up python3-werkzeug (2.0.2+dfsg1-1) ... Setting up python3-jmespath (1.0.0-1) ... Setting up coinor-libclp1 (1.17.6-1) ... Setting up sphinx-common (4.5.0-4) ... Setting up python3-gi (3.42.1-1) ... Setting up python3-reportlab-accel:amd64 (3.6.9-1) ... Setting up python3-connection-pool (0.0.3-2) ... Setting up libgd3:amd64 (2.3.0-2ubuntu2) ... Setting up python3-idna (3.3-1) ... Setting up python3-wrapt (1.13.3-1build1) ... Setting up python3-typing-extensions (3.10.0.2-1) ... Setting up git (1:2.36.1-1ubuntu1) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-urllib3 (1.26.9-1) ... Setting up python3-pluggy (1.0.0-1) ... Setting up python3-reportlab (3.6.9-1) ... Setting up python3-fastjsonschema (2.15.1-2) ... Setting up python3-mistune0 (0.8.4-2) ... Setting up python3-pyrsistent:amd64 (0.18.1-1build1) ... Setting up python3-lxml:amd64 (4.8.0-1build1) ... Setting up python3-traitlets (5.3.0-1) ... Setting up python3-portalocker (2.2.1-1) ... Setting up libmagickwand-6.q16-6:amd64 (8:6.9.11.60+dfsg-1.3build2) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-msgpack (1.0.3-1build1) ... Setting up libxss1:amd64 (1:1.2.3-1build2) ... Setting up coinor-libcgl1:amd64 (0.60.3+repack1-4) ... Setting up python3-datrie:amd64 (0.8.2-2) ... Setting up python3-shellescape (3.4.1-5) ... Setting up libpangoft2-1.0-0:amd64 (1.50.7+ds-1) ... Setting up environment-modules (5.1.1-1) ... Setting up python3-argcomplete (2.0.0-1ubuntu1) ... Setting up python3-lib2to3 (3.10.4-0ubuntu2) ... Setting up python3-coloredlogs (7.3-3) ... Setting up python3-appdirs (1.4.4-2) ... Setting up python3-yarl (1.7.2-1build1) ... Setting up python3-smmap (5.0.0-1) ... Setting up python3-cffi-backend:amd64 (1.15.0-1build2) ... Setting up libpangocairo-1.0-0:amd64 (1.50.7+ds-1) ... Setting up python3-imagesize (1.3.0-1) ... Setting up python3-blinker (1.4+dfsg1-0.5) ... Setting up python3-commonmark (0.9.1-4) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.4-0ubuntu2) ... Setting up dh-python (5.20220403) ... Setting up python3-toposort (1.6-1) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-configargparse (1.5.3-1) ... Setting up python3-arcp (0.2.1-4) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (21.2.0-1) ... Setting up python3-lockfile (1:0.12.2-2.2) ... Setting up coinor-libcbc3:amd64 (2.10.8+ds1-1) ... Setting up libxft2:amd64 (2.3.4-1) ... Setting up python3-filelock (3.7.1-1) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up python3-renderpm:amd64 (3.6.9-1) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up python3-py (1.10.0-1) ... Setting up python3-jwt (2.3.0-1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-colorama (0.4.5-1) ... Setting up python3-pytz-deprecation-shim (0.1.0.post0-2) ... Setting up python3-charset-normalizer (2.0.6-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-mypy-extensions (0.4.3-3) ... Setting up python3-bcrypt (3.2.0-1build1) ... Setting up libtk8.6:amd64 (8.6.12-1build1) ... Setting up python3-ply (3.11-5) ... Setting up python3-ruamel.yaml.clib:amd64 (0.2.6-1build1) ... Setting up python3-tabulate (0.8.9-0ubuntu1) ... Setting up python3-itsdangerous (2.1.2-1) ... Setting up python3-yaml (5.4.1-1ubuntu1) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up python3-gitdb (4.0.9-1) ... Setting up python3-uamqp (1.5.3-1) ... Setting up python3-zipp (1.0.0-4) ... Setting up python3-click (8.0.3-1) ... Setting up python3-networkx (2.4-4ubuntu2) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:933: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.nodes['n1']['special'] is 0 /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:935: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.edges['n0','n1',1]['special'] is 0 Setting up python3-async-timeout (4.0.1-1) ... Setting up python3-stone (3.3.1-1) ... Setting up python3-jinja2 (3.0.3-1) ... Setting up python3-pygments (2.11.2+dfsg-2) ... Setting up python3-packaging (21.3-1) ... Setting up python3-chardet (4.0.0-2) ... Setting up coinor-cbc (2.10.8+ds1-1) ... Setting up python3-cryptography (3.4.8-2) ... Setting up python3-git (3.1.27-1) ... Setting up python3-requests (2.27.1+dfsg-1ubuntu2) ... Setting up r-base-core (4.2.0-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.1-1) ... Setting up libgvc6 (2.42.2-7) ... Setting up r-cran-sourcetools (0.1.7-3) ... Setting up python3-numpy (1:1.21.5-1build2) ... Setting up imagemagick-6.q16 (8:6.9.11.60+dfsg-1.3build2) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up python3-ruamel.yaml (0.17.16-1) ... Setting up python3-adal (1.2.7-1) ... Setting up python3-stopit (1.1.2-2) ... Setting up python3-rdflib (6.1.1-1) ... Setting up python3-cachecontrol (0.12.11-1) ... Setting up r-cran-commonmark (1.8.0-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up python3-tzlocal (4.2-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up python3-jupyter-core (4.10.0-1) ... Setting up python3-nacl (1.5.0-2) ... Setting up python3-dropbox (11.30.0-1) ... Setting up r-cran-littler (0.3.15-1) ... Setting up graphviz (2.42.2-7) ... Setting up r-cran-fs (1.5.2+dfsg-1) ... Setting up r-cran-rcpp (1.0.8.3-1) ... Setting up r-cran-rlang (1.0.2-1) ... Setting up python3-importlib-metadata (4.6.4-1) ... Setting up littler (0.3.15-1) ... Setting up r-cran-xfun (0.31-1) ... Setting up r-cran-withr (2.5.0-1) ... Setting up python3-pulp (2.6.0+dfsg-1) ... Setting up r-cran-mime (0.12-1) ... Setting up python3-pytest (6.2.5-3ubuntu1) ... Setting up python3-flask (2.0.1-2ubuntu1) ... Setting up python3-pydot (1.4.2-1build1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.29-1) ... Setting up r-cran-yaml (2.3.5-1) ... Setting up python3-pandas-lib:amd64 (1.3.5+dfsg-4) ... Setting up r-cran-evaluate (0.15-1) ... Setting up r-cran-highr (0.9+dfsg-1) ... Setting up python3-schema-salad (8.2.20220204150214-1) ... Setting up python3-aiohttp (3.8.1-4build1) ... Setting up python3-msal (1.18.0b1-1) ... Setting up python3-msal-extensions (1.0.0-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-lifecycle (1.0.1-1) ... Setting up python3-prov (2.0.0-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-jsonlite (1.8.0+dfsg-1) ... Setting up python3-oauthlib (3.2.0-1) ... Setting up r-cran-stringi (1.7.6-1build2) ... Setting up python3-pandas (1.3.5+dfsg-4) ... Setting up python3-jsonschema (3.2.0-0ubuntu2) ... Setting up python3-requests-mock (1.9.3-2) ... Setting up python3-botocore (1.26.8+repack-1) ... Setting up r-cran-later (1.3.0+dfsg-1) ... Setting up python3-pytools (2021.2.8-1) ... Setting up r-cran-htmltools (0.5.2-1) ... Setting up imagemagick (8:6.9.11.60+dfsg-1.3build2) ... Setting up r-cran-tinytex (0.39-1) ... Setting up python3-rpy2 (3.5.2-1) ... Setting up python3-pygraphviz (1.7-3build1) ... Setting up r-cran-cachem (1.0.6-1) ... Setting up r-cran-sass (0.4.1+dfsg-1) ... Setting up python3-paramiko (2.10.4-1ubuntu1) ... Setting up python3-requests-oauthlib (1.3.0+ds-0.1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-stringr (1.4.0-2build1) ... Setting up python3-s3transfer (0.5.2-1) ... Setting up python3-nbformat (5.4.0-2) ... Setting up cwltool (3.1.20220224085855-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-3) ... Setting up python3-msrest (0.6.21-2) ... Setting up r-cran-bslib (0.3.1+dfsg-2) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up python3-boto3 (1.23.8+dfsg-1) ... Setting up r-cran-knitr (1.39+dfsg-1) ... Setting up python3-msrestazure (0.6.4-1) ... Setting up r-cran-httpuv (1.6.5+dfsg-1) ... Setting up r-cran-shiny (1.6.0+dfsg-1) ... Setting up r-cran-rmarkdown (2.14+dfsg-2) ... Setting up python3-azure (20220407+git-1) ... Setting up python3-azure-storage (20220407+git-1) ... Setting up python3-smart-open (5.2.1-4) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.17.1+dfsg-2) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.79+dfsg-3) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.17.1+dfsg-2) ... Setting up python3-sphinx (4.5.0-4) ... Setting up python3-sphinx-rtd-theme (1.0.0+dfsg-1) ... Setting up python3-recommonmark (0.7.1+ds-1) ... Setting up python3-sphinx-argparse (0.3.1-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-27.28 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 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python3-networkx_2.4-4ubuntu2 python3-numpy_1:1.21.5-1build2 python3-oauthlib_3.2.0-1 python3-packaging_21.3-1 python3-pandas_1.3.5+dfsg-4 python3-pandas-lib_1.3.5+dfsg-4 python3-paramiko_2.10.4-1ubuntu1 python3-pil_9.1.1-1 python3-pkg-resources_59.6.0-1.2 python3-pluggy_1.0.0-1 python3-ply_3.11-5 python3-portalocker_2.2.1-1 python3-prov_2.0.0-2 python3-psutil_5.9.0-1build1 python3-pulp_2.6.0+dfsg-1 python3-py_1.10.0-1 python3-pydot_1.4.2-1build1 python3-pygments_2.11.2+dfsg-2 python3-pygraphviz_1.7-3build1 python3-pyparsing_3.0.7-2 python3-pyrsistent_0.18.1-1build1 python3-pytest_6.2.5-3ubuntu1 python3-pytools_2021.2.8-1 python3-pytz-deprecation-shim_0.1.0.post0-2 python3-ratelimiter_1.2.0.post0-2 python3-rdflib_6.1.1-1 python3-recommonmark_0.7.1+ds-1 python3-renderpm_3.6.9-1 python3-reportlab_3.6.9-1 python3-reportlab-accel_3.6.9-1 python3-requests_2.27.1+dfsg-1ubuntu2 python3-requests-mock_1.9.3-2 python3-requests-oauthlib_1.3.0+ds-0.1 python3-roman_3.3-1 python3-rpy2_3.5.2-1 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sensible-utils_0.0.17 sgml-base_1.30 sphinx-common_4.5.0-4 sphinx-rtd-theme-common_1.0.0+dfsg-1 stress_1.0.5-1 systemd_249.11-0ubuntu4 systemd-sysv_249.11-0ubuntu4 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tcl8.6_8.6.12+dfsg-1build1 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu3 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu2 xdg-utils_1.1.3-4.1ubuntu2 xml-core_0.18+nmu1 xz-utils_5.2.5-2.1 zip_3.0-12build2 zlib1g_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: snakemake Binary: snakemake, snakemake-doc Architecture: all Version: 6.15.5-1 Maintainer: Debian Med Packaging Team Uploaders: Kevin Murray , Rebecca N. Palmer Homepage: https://snakemake.readthedocs.io/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/snakemake Vcs-Git: https://salsa.debian.org/med-team/snakemake.git Testsuite: autopkgtest Testsuite-Triggers: environment-modules, python3-connection-pool, python3-ftputil, python3-jinja2, python3-pandas, python3-pygraphviz, python3-pytest, python3-requests-mock, r-base-core, stress Build-Depends: ca-certificates, cwltool, debhelper-compat (= 13), dh-python, environment-modules, imagemagick, python3, python3-appdirs , python3-biopython , python3-boto3 , python3-botocore , python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-dropbox , python3-filelock, python3-flask , python3-git, python3-jinja2, python3-jsonschema, python3-nbformat, python3-networkx , python3-pandas , python3-pkg-resources, python3-psutil, python3-pulp (>= 2.0~), python3-pygments , python3-pygraphviz , python3-pytest , python3-pytools , python3-ratelimiter, python3-recommonmark , python3-requests, python3-requests-mock , python3-rpy2 , python3-setuptools, python3-smart-open (>= 3.0~), python3-sphinx (>= 3.0~) , python3-sphinx-argparse , python3-sphinx-bootstrap-theme , python3-sphinx-rtd-theme , python3-stopit, python3-tabulate, python3-toposort , python3-wrapt, python3-yaml, r-cran-rmarkdown, stress Package-List: snakemake deb science optional arch=all snakemake-doc deb doc optional arch=all Checksums-Sha1: 220faa17c59112944a2d13dfe04440bd5577f023 7646094 snakemake_6.15.5.orig.tar.gz 74e65d3820dc7ff1e034c12d23b1440b3d314a26 23248 snakemake_6.15.5-1.debian.tar.xz Checksums-Sha256: 97058d695dd6e62bd107026399aefa3586a3eb3582c195e1db135b0cf74548d0 7646094 snakemake_6.15.5.orig.tar.gz 357f572e8e2d7ad48dade29d3a5df74e683e429fff60d48d72f9168eac319d32 23248 snakemake_6.15.5-1.debian.tar.xz Files: bb88e89ec88a49cbc91d3e7c68f77da5 7646094 snakemake_6.15.5.orig.tar.gz 4188fefb3d111c2839b3eba2c67a72ab 23248 snakemake_6.15.5-1.debian.tar.xz 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"rebecca_palmer@zoho.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./snakemake_6.15.5-1.dsc dpkg-source: info: extracting snakemake in /<> dpkg-source: info: unpacking snakemake_6.15.5.orig.tar.gz dpkg-source: info: unpacking snakemake_6.15.5-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying local_javascript.patch dpkg-source: info: applying 0003-Compat-fix.patch dpkg-source: info: applying 0006-restore-bin.patch dpkg-source: info: applying 0008-remove_sphinx.ext.patch dpkg-source: info: applying 0009-skip-test-without-google-cloud-sdk.patch dpkg-source: info: applying python3.patch dpkg-source: info: applying workaround_sphinx_issue.patch dpkg-source: info: applying remove_ccbysa_snippets.patch dpkg-source: info: applying fix_test_pytest.patch dpkg-source: info: applying python2to3.patch dpkg-source: info: applying reproducible-build.patch dpkg-source: info: applying test_from_any_directory.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24076371 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24076371 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24076371 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package snakemake dpkg-buildpackage: info: source version 6.15.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean I: pybuild base:239: python3.10 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.10_snakemake/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it find . -name '__pycache__' | xargs -r rm -r rm -rf .snakemake snakemake.egg-info make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:239: python3.10 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:239: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/checkpoints.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/sourcecache.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/rules.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/modules.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/scheduler.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/parser.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/exceptions.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/persistence.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/shell.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/ruleinfo.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/utils.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/workflow.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/benchmark.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/stats.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/wrapper.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/path_modifier.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/gui.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/jobs.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/cwl.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/script.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/decorators.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/resources.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/logging.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/dag.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/output_index.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/notebook.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/_version.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/io.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/__main__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/XRootD.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/gfal.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/gridftp.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/FTP.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/GS.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/NCBI.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/S3Mocked.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/iRODS.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/webdav.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/HTTP.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/SFTP.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/EGA.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/S3.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/dropbox.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote copying snakemake/remote/AzBlob.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/report copying snakemake/report/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/report creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/common copying snakemake/common/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/common creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching copying snakemake/caching/local.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching copying snakemake/caching/hash.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching copying snakemake/caching/remote.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching copying snakemake/caching/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment copying snakemake/deployment/singularity.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment copying snakemake/deployment/conda.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment copying snakemake/deployment/env_modules.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment copying snakemake/deployment/containerize.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment copying snakemake/deployment/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting copying snakemake/linting/rules.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting copying snakemake/linting/links.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting copying snakemake/linting/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting copying snakemake/linting/snakefiles.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors copying snakemake/executors/ga4gh_tes.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors copying snakemake/executors/google_lifesciences.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors copying snakemake/executors/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests creating /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests/templates copying snakemake/report.css -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/gui.html -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake copying snakemake/report/report.html.jinja2 -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/report copying snakemake/executors/jobscript.sh -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests/templates UPDATING /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/_version.py set /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/_version.py to '6.15.5' debian/rules execute_after_dh_auto_build make[1]: Entering directory '/<>' PYTHONPATH=/<>/.pybuild/cpython3_3.10_snakemake/build \ LC_ALL=C.UTF-8 LANGUAGE=C.UTF-8 python3 setup.py build_sphinx running build_sphinx Running Sphinx v4.5.0 making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 42 source files that are out of date updating environment: [new config] 42 added, 0 changed, 0 removed reading sources... [ 2%] api_reference/internal/modules reading sources... [ 4%] api_reference/internal/snakemake reading sources... [ 7%] api_reference/internal/snakemake.remote reading sources... [ 9%] api_reference/internal/snakemake.report reading sources... [ 11%] api_reference/snakemake reading sources... [ 14%] api_reference/snakemake_utils reading sources... [ 16%] executing/caching reading sources... [ 19%] executing/cli reading sources... [ 21%] executing/cloud reading sources... [ 23%] executing/cluster reading sources... [ 26%] executing/grouping reading sources... [ 28%] executing/interoperability reading sources... [ 30%] executing/monitoring reading sources... [ 33%] executor_tutorial/azure_aks reading sources... [ 35%] executor_tutorial/google_lifesciences reading sources... [ 38%] executor_tutorial/tutorial reading sources... [ 40%] getting_started/installation reading sources... [ 42%] index reading sources... [ 45%] project_info/authors reading sources... [ 47%] project_info/citations reading sources... [ 50%] project_info/contributing reading sources... [ 52%] project_info/faq reading sources... [ 54%] project_info/history reading sources... [ 57%] project_info/license reading sources... [ 59%] project_info/more_resources reading sources... [ 61%] snakefiles/best_practices reading sources... [ 64%] snakefiles/configuration reading sources... [ 66%] snakefiles/deployment reading sources... [ 69%] snakefiles/foreign_wms reading sources... [ 71%] snakefiles/modularization reading sources... [ 73%] snakefiles/remote_files reading sources... [ 76%] snakefiles/reporting reading sources... [ 78%] snakefiles/rules reading sources... [ 80%] snakefiles/testing reading sources... [ 83%] snakefiles/utils reading sources... [ 85%] snakefiles/writing_snakefiles reading sources... [ 88%] tutorial/additional_features reading sources... [ 90%] tutorial/advanced reading sources... [ 92%] tutorial/basics reading sources... [ 95%] tutorial/setup reading sources... [ 97%] tutorial/short reading sources... [100%] tutorial/tutorial WARNING: autodoc: failed to import module 'conda' from module 'snakemake'; the following exception was raised: No module named 'snakemake.conda' /<>/snakemake/exceptions.py:docstring of snakemake.exceptions.print_exception:6: ERROR: Unexpected indentation. /<>/snakemake/io.py:docstring of snakemake.io.expand:5: ERROR: Unexpected indentation. /<>/snakemake/io.py:docstring of snakemake.io.expand:3: WARNING: Inline emphasis start-string without end-string. /<>/snakemake/io.py:docstring of snakemake.io.expand:7: WARNING: Block quote ends without a blank line; unexpected unindent. /<>/snakemake/io.py:docstring of snakemake.io.expand:8: WARNING: Inline strong start-string without end-string. /<>/snakemake/io.py:docstring of snakemake.io.limit:5: ERROR: Unexpected indentation. /<>/snakemake/io.py:docstring of snakemake.io.limit:3: WARNING: Inline strong start-string without end-string. /<>/snakemake/io.py:docstring of snakemake.io.report:3: WARNING: Inline emphasis start-string without end-string. /<>/snakemake/io.py:docstring of snakemake.io.report:10: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'singularity' from module 'snakemake'; the following exception was raised: No module named 'snakemake.singularity' /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace:6: WARNING: Inline strong start-string without end-string. /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace:6: WARNING: Inline emphasis start-string without end-string. /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace.wildcard_pattern:1: WARNING: Inline strong start-string without end-string. WARNING: autodoc: failed to import module 'FTP' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/<>/snakemake/remote/FTP.py", line 20, in import ftputil ModuleNotFoundError: No module named 'ftputil' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 62, in import_module return importlib.import_module(modname) File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/<>/snakemake/remote/FTP.py", line 23, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'ftputil' must be installed to use FTP remote() file functionality. No module named 'ftputil' WARNING: autodoc: failed to import module 'GS' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/<>/snakemake/remote/GS.py", line 19, in import google.cloud ModuleNotFoundError: No module named 'google' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 62, in import_module return importlib.import_module(modname) File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/<>/snakemake/remote/GS.py", line 24, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 packages 'google-cloud-sdk' and `google-crc32c` need to be installed to use GS remote() file functionality. No module named 'google' /<>/snakemake/remote/NCBI.py:docstring of snakemake.remote.NCBI.NCBIHelper.fetch_from_ncbi:3: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'S3Mocked' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/<>/snakemake/remote/S3Mocked.py", line 27, in from moto import mock_s3 ModuleNotFoundError: No module named 'moto' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 62, in import_module return importlib.import_module(modname) File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/<>/snakemake/remote/S3Mocked.py", line 29, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 packages 'moto' and boto3' need to be installed to use S3Mocked remote() file functionality. No module named 'moto' WARNING: autodoc: failed to import module 'SFTP' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/<>/snakemake/remote/SFTP.py", line 15, in import pysftp ModuleNotFoundError: No module named 'pysftp' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 62, in import_module return importlib.import_module(modname) File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/<>/snakemake/remote/SFTP.py", line 17, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'pysftp' must be installed to use SFTP remote() file functionality. No module named 'pysftp' WARNING: autodoc: failed to import module 'XRootD' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/<>/snakemake/remote/XRootD.py", line 15, in from XRootD import client ModuleNotFoundError: No module named 'XRootD' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 62, in import_module return importlib.import_module(modname) File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/<>/snakemake/remote/XRootD.py", line 18, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'XRootD' must be installed to use XRootD remote() file functionality. No module named 'XRootD' WARNING: autodoc: failed to import module 'gfal' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 62, in import_module return importlib.import_module(modname) File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/<>/snakemake/remote/gfal.py", line 21, in raise WorkflowError( snakemake.exceptions.WorkflowError: The gfal-* commands need to be available for gfal remote support. WARNING: autodoc: failed to import module 'gridftp' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 62, in import_module return importlib.import_module(modname) File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/<>/snakemake/remote/gridftp.py", line 18, in raise WorkflowError( snakemake.exceptions.WorkflowError: The globus-url-copy command has to be available for gridftp remote support. WARNING: autodoc: failed to import module 'iRODS' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/<>/snakemake/remote/iRODS.py", line 20, in from irods.session import iRODSSession ModuleNotFoundError: No module named 'irods' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 62, in import_module return importlib.import_module(modname) File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/<>/snakemake/remote/iRODS.py", line 26, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 package 'python-irodsclient' must be installed to use iRODS remote() file functionality. No module named 'irods' WARNING: autodoc: failed to import module 'webdav' from module 'snakemake.remote'; the following exception was raised: Traceback (most recent call last): File "/<>/snakemake/remote/webdav.py", line 18, in import aioeasywebdav ModuleNotFoundError: No module named 'aioeasywebdav' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 62, in import_module return importlib.import_module(modname) File "/usr/lib/python3.10/importlib/__init__.py", line 126, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1050, in _gcd_import File "", line 1027, in _find_and_load File "", line 1006, in _find_and_load_unlocked File "", line 688, in _load_unlocked File "", line 883, in exec_module File "", line 241, in _call_with_frames_removed File "/<>/snakemake/remote/webdav.py", line 21, in raise WorkflowError( snakemake.exceptions.WorkflowError: The Python 3 packages 'aioeasywebdav' and 'asyncio' must be present to use WebDAV remote() file functionality. No module named 'aioeasywebdav' /<>/docs/api_reference/internal/snakemake.remote.rst:5: WARNING: duplicate label submodules, other instance in /<>/docs/api_reference/internal/snakemake.rst /<>/docs/api_reference/internal/snakemake.remote.rst:121: WARNING: duplicate label module contents, other instance in /<>/docs/api_reference/internal/snakemake.rst /<>/docs/api_reference/internal/snakemake.report.rst:5: WARNING: duplicate label module contents, other instance in /<>/docs/api_reference/internal/snakemake.remote.rst /<>/snakemake/__init__.py:docstring of snakemake.snakemake:1: WARNING: duplicate object description of snakemake.snakemake, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils:1: WARNING: duplicate object description of snakemake.utils, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.AlwaysQuotedFormatter:1: WARNING: duplicate object description of snakemake.utils.AlwaysQuotedFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace:1: WARNING: duplicate object description of snakemake.utils.Paramspace, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace:6: WARNING: Inline strong start-string without end-string. /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace:6: WARNING: Inline emphasis start-string without end-string. /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace.instance:1: WARNING: duplicate object description of snakemake.utils.Paramspace.instance, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace.instance_patterns:1: WARNING: duplicate object description of snakemake.utils.Paramspace.instance_patterns, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace.wildcard_pattern:1: WARNING: duplicate object description of snakemake.utils.Paramspace.wildcard_pattern, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.Paramspace.wildcard_pattern:1: WARNING: Inline strong start-string without end-string. /<>/snakemake/utils.py:docstring of snakemake.utils.QuotedFormatter:1: WARNING: duplicate object description of snakemake.utils.QuotedFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.R:1: WARNING: duplicate object description of snakemake.utils.R, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.SequenceFormatter:1: WARNING: duplicate object description of snakemake.utils.SequenceFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.SequenceFormatter.format_element:1: WARNING: duplicate object description of snakemake.utils.SequenceFormatter.format_element, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.argvquote:1: WARNING: duplicate object description of snakemake.utils.argvquote, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.available_cpu_count:1: WARNING: duplicate object description of snakemake.utils.available_cpu_count, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.cmd_exe_quote:1: WARNING: duplicate object description of snakemake.utils.cmd_exe_quote, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.find_bash_on_windows:1: WARNING: duplicate object description of snakemake.utils.find_bash_on_windows, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.format:1: WARNING: duplicate object description of snakemake.utils.format, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.linecount:1: WARNING: duplicate object description of snakemake.utils.linecount, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.listfiles:1: WARNING: duplicate object description of snakemake.utils.listfiles, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.makedirs:1: WARNING: duplicate object description of snakemake.utils.makedirs, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.min_version:1: WARNING: duplicate object description of snakemake.utils.min_version, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.os_sync:1: WARNING: duplicate object description of snakemake.utils.os_sync, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.read_job_properties:1: WARNING: duplicate object description of snakemake.utils.read_job_properties, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.report:1: WARNING: duplicate object description of snakemake.utils.report, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.simplify_path:1: WARNING: duplicate object description of snakemake.utils.simplify_path, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.update_config:1: WARNING: duplicate object description of snakemake.utils.update_config, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/snakemake/utils.py:docstring of snakemake.utils.validate:1: WARNING: duplicate object description of snakemake.utils.validate, other instance in api_reference/internal/snakemake, use :noindex: for one of them /<>/docs/executing/cli.rst:169: ERROR: Unknown directive type "argparse". .. argparse:: :module: snakemake :func: get_argument_parser :prog: snakemake All command line options can be printed by calling ``snakemake -h``. /<>/docs/executing/cli.rst:101: WARNING: duplicate label profiles, other instance in /<>/docs/executing/cli.rst /<>/docs/executing/monitoring.rst:5: WARNING: duplicate label monitoring, other instance in /<>/docs/executing/monitoring.rst /<>/docs/executor_tutorial/azure_aks.rst:184: ERROR: Unexpected indentation. /<>/docs/executor_tutorial/google_lifesciences.rst:13: WARNING: duplicate label setup, other instance in /<>/docs/executor_tutorial/azure_aks.rst /<>/docs/index.rst:5: WARNING: Duplicate explicit target name: "bioconda". /<>/docs/index.rst:: WARNING: duplicate label execution, other instance in /<>/docs/executing/cloud.rst /<>/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/snakefiles/best_practices.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/snakefiles/configuration.rst:52: WARNING: malformed hyperlink target. /<>/docs/snakefiles/configuration.rst:5: WARNING: duplicate label configuration, other instance in /<>/docs/executing/cloud.rst /<>/docs/snakefiles/configuration.rst:74: WARNING: duplicate label environment variables, other instance in /<>/docs/executing/cloud.rst /<>/docs/snakefiles/deployment.rst:303: ERROR: Error in "code-block" directive: maximum 1 argument(s) allowed, 11 supplied. .. code-block:: python rule NAME: input: "table.txt" output: "plots/myplot.pdf" conda: "some-env-name" script: "scripts/plot-stuff.R" /<>/docs/snakefiles/deployment.rst:324: WARNING: Title overline too short. ------------------------- Providing post-deployment scripts ------------------------- /<>/docs/snakefiles/deployment.rst:324: WARNING: Title overline too short. ------------------------- Providing post-deployment scripts ------------------------- /<>/docs/snakefiles/modularization.rst:7: WARNING: Duplicate explicit target name: "cwl". /<>/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here". /<>/docs/snakefiles/rules.rst:319: WARNING: duplicate label resources, other instance in /<>/docs/index.rst /<>/docs/snakefiles/rules.rst:1092: WARNING: duplicate label job properties, other instance in /<>/docs/executing/cluster.rst /<>/docs/tutorial/additional_features.rst:73: WARNING: duplicate label modularization, other instance in /<>/docs/snakefiles/modularization.rst /<>/docs/tutorial/additional_features.rst:198: WARNING: duplicate label cluster execution, other instance in /<>/docs/executing/cluster.rst /<>/docs/tutorial/advanced.rst:82: WARNING: duplicate label exercise, other instance in /<>/docs/tutorial/additional_features.rst /<>/docs/tutorial/advanced.rst:177: WARNING: duplicate label exercise, other instance in /<>/docs/tutorial/advanced.rst /<>/docs/tutorial/advanced.rst:213: WARNING: duplicate label exercise, other instance in /<>/docs/tutorial/advanced.rst /<>/docs/tutorial/advanced.rst:250: WARNING: duplicate label exercise, other instance in /<>/docs/tutorial/advanced.rst /<>/docs/tutorial/advanced.rst:304: WARNING: duplicate label exercise, other instance in /<>/docs/tutorial/advanced.rst /<>/docs/tutorial/basics.rst:286: ERROR: Unknown target name: "run tutorial for free in the cloud via gitpod". /<>/docs/tutorial/basics.rst:301: WARNING: duplicate label exercise, other instance in /<>/docs/tutorial/advanced.rst /<>/docs/tutorial/basics.rst:379: WARNING: duplicate label exercise, other instance in /<>/docs/tutorial/basics.rst /<>/docs/tutorial/basics.rst:490: WARNING: duplicate label exercise, other instance in /<>/docs/tutorial/basics.rst /<>/docs/tutorial/basics.rst:498: WARNING: duplicate label summary, other instance in /<>/docs/tutorial/advanced.rst /<>/docs/tutorial/setup.rst:172: ERROR: Error in "code" directive: maximum 1 argument(s) allowed, 10 supplied. .. code:: console $ tar --wildcards -xf snakemake-tutorial-data.tar.gz --strip 1 "*/data" "*/environment.yaml" /<>/docs/tutorial/setup.rst:177: ERROR: Error in "code" directive: maximum 1 argument(s) allowed, 9 supplied. .. code:: console $ tar -xf snakemake-tutorial-data.tar.gz --strip 1 "*/data" "*/environment.yaml" /<>/docs/tutorial/setup.rst:5: WARNING: duplicate label setup, other instance in /<>/docs/executor_tutorial/google_lifesciences.rst /<>/docs/tutorial/short.rst:344: WARNING: duplicate label threads, other instance in /<>/docs/snakefiles/rules.rst /<>/docs/tutorial/short.rst:376: WARNING: duplicate label step 2, other instance in /<>/docs/tutorial/short.rst /<>/docs/tutorial/short.rst:396: WARNING: duplicate label step 3, other instance in /<>/docs/tutorial/short.rst /<>/docs/tutorial/short.rst:416: WARNING: duplicate label step 4, other instance in /<>/docs/tutorial/short.rst /<>/docs/tutorial/short.rst:435: WARNING: duplicate label step 5, other instance in /<>/docs/tutorial/short.rst /<>/docs/tutorial/short.rst:457: WARNING: duplicate label step 6, other instance in /<>/docs/tutorial/short.rst /<>/docs/tutorial/short.rst:476: WARNING: duplicate label step 7, other instance in /<>/docs/tutorial/short.rst /<>/docs/tutorial/short.rst:492: WARNING: duplicate label step 8, other instance in /<>/docs/tutorial/short.rst looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] api_reference/internal/modules writing output... [ 4%] api_reference/internal/snakemake writing output... [ 7%] api_reference/internal/snakemake.remote writing output... [ 9%] api_reference/internal/snakemake.report writing output... [ 11%] api_reference/snakemake writing output... [ 14%] api_reference/snakemake_utils writing output... [ 16%] executing/caching writing output... [ 19%] executing/cli writing output... [ 21%] executing/cloud writing output... [ 23%] executing/cluster writing output... [ 26%] executing/grouping writing output... [ 28%] executing/interoperability writing output... [ 30%] executing/monitoring writing output... [ 33%] executor_tutorial/azure_aks writing output... [ 35%] executor_tutorial/google_lifesciences writing output... [ 38%] executor_tutorial/tutorial writing output... [ 40%] getting_started/installation writing output... [ 42%] index writing output... [ 45%] project_info/authors writing output... [ 47%] project_info/citations writing output... 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[100%] tutorial/tutorial /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:45: WARNING: undefined label: changelog /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/snakefiles/best_practices.rst:22: WARNING: undefined label: snakefiles_tabular_configuration /<>/docs/snakefiles/best_practices.rst:22: WARNING: undefined label: snakefiles_peps /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/snakefiles/foreign_wms.rst:30: WARNING: undefined label: snakefiles-local-rule /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/snakefiles/rules.rst:395: WARNING: undefined label: user_manual-snakemake_options /<>/docs/snakefiles/rules.rst:895: WARNING: undefined label: snakefiles_external-scripts /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/tutorial/basics.rst:392: WARNING: undefined label: .. _snakefiles-rules /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated generating indices... genindex /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated py-modindex /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated done highlighting module code... [ 3%] snakemake /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated highlighting module code... [ 6%] snakemake.benchmark /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated highlighting module code... [ 9%] snakemake.checkpoints /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated highlighting module code... [ 12%] snakemake.common /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated highlighting module code... [ 16%] snakemake.cwl /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated highlighting module code... 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[100%] snakemake.wrapper /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated writing additional pages... search /<>/docs/index.rst:143: WARNING: toctree contains reference to document 'project_info/history' that doesn't have a title: no link will be generated done copying images... [ 14%] executor_tutorial/workflow/upload-google-storage.png copying images... [ 28%] executor_tutorial/workflow/quals.svg copying images... [ 42%] executor_tutorial/workflow/results-google-storage.png copying images... [ 57%] project_info/img/idea.png copying images... [ 71%] snakefiles/images/snakemake-notebook-demo.gif copying images... [ 85%] tutorial/workflow/dag_index.png copying images... [100%] tutorial/workflow/dag_call.png copying downloadable files... [ 50%] ../tests/test_report/custom-stylesheet.css copying downloadable files... [100%] ../tests/test_report/expected-results/report.html copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 187 warnings. The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' . /etc/profile.d/modules.sh && PYBUILD_SYSTEM=custom dh_auto_test I: pybuild pybuild:300: chmod +x /<>/bin/snakemake; cp -r /<>/bin /<>/tests /<>/.pybuild/cpython3_3.10_snakemake/build I: pybuild base:239: python3.10 -m pytest -v /<>/.pybuild/cpython3_3.10_snakemake/build/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_ancient and not test_github_issue1062 and not test_symlink_time_handling and not test_env_modules' ============================= test session starts ============================== platform linux -- Python 3.10.5, pytest-6.2.5, py-1.10.0, pluggy-1.0.0 -- /usr/bin/python3.10 cachedir: .pytest_cache rootdir: /<> plugins: requests-mock-1.9.3 collecting ... collected 293 items / 75 deselected / 218 selected .pybuild/cpython3_3.10_snakemake/build/tests/test_expand.py::test_simple_expand PASSED [ 0%] .pybuild/cpython3_3.10_snakemake/build/tests/test_expand.py::test_allow_missing PASSED [ 0%] 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.pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_set_resources PASSED [ 94%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_github_issue1069 PASSED [ 95%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_touch_pipeline_with_temp_dir PASSED [ 95%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_all_temp PASSED [ 96%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_strict_mode PASSED [ 96%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_github_issue1158 XFAIL [ 97%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_converting_path_for_r_script PASSED [ 97%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_checkpoint_allowed_rules PASSED [ 98%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 98%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_default_target PASSED [ 99%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_cache_multioutput PASSED [ 99%] .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_github_issue1384 PASSED [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.10_snakemake/build/snakemake/workflow.py:1221 /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/workflow.py:1221: DeprecationWarning: invalid escape sequence '\d' self.global_wildcard_constraints(scatteritem="\d+-of-\d+") .pybuild/cpython3_3.10_snakemake/build/snakemake/sourcecache.py:278 /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/sourcecache.py:278: DeprecationWarning: invalid escape sequence '\d' "https://raw.githubusercontent.com/snakemake/snakemake-wrappers/\d+\.\d+.\d+" .pybuild/cpython3_3.10_snakemake/build/tests/testapi.py::test_keep_logger /usr/lib/python3/dist-packages/ratelimiter.py:127: DeprecationWarning: "@coroutine" decorator is deprecated since Python 3.8, use "async def" instead __aexit__ = asyncio.coroutine(__exit__) .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_validate /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/utils.py:99: DeprecationWarning: The metaschema specified by $schema was not found. Using the latest draft to validate, but this will raise an error in the future. Validator = validators.validator_for(schema) .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_linting /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/rules.py:113: DeprecationWarning: invalid escape sequence '\[' def lint_iofile_by_index(self, rule, regex=re.compile("(input|output)\[[0-9]+\]")): .pybuild/cpython3_3.10_snakemake/build/tests/tests.py::test_linting /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/snakefiles.py:70: DeprecationWarning: invalid escape sequence '\[' regex=re.compile("os.environ\[(?P['\"])(?P.+)?(?P=quote)\]"), -- Docs: https://docs.pytest.org/en/stable/warnings.html = 206 passed, 11 skipped, 75 deselected, 1 xfailed, 6 warnings in 900.40s (0:15:00) = I: pybuild pybuild:326: rm -fr /<>/.pybuild/cpython3_3.10_snakemake/build/bin /<>/.pybuild/cpython3_3.10_snakemake/build/tests make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:239: /usr/bin/python3 setup.py install --root /<>/debian/snakemake running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py UPDATING /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/_version.py set /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/_version.py to '6.15.5' running install_lib creating /<>/debian/snakemake creating /<>/debian/snakemake/usr creating /<>/debian/snakemake/usr/lib creating /<>/debian/snakemake/usr/lib/python3.10 creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/report copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/report/report.html.jinja2 -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/report copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/report/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/report copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/checkpoints.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/sourcecache.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/rules.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/modules.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/common copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/common/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/common creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/common/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/common/__pycache__/__init__.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/common/__pycache__ creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/rules.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/links.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/__pycache__/snakefiles.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/__pycache__/links.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/__pycache__/__init__.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/__pycache__/rules.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/linting/snakefiles.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/scheduler.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests/templates copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests/templates/ruletest.py.jinja2 -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests/templates copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests/templates/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests/templates copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests/templates/common.py.jinja2 -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests/templates copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/unit_tests/__pycache__/__init__.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/parser.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/exceptions.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/persistence.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/shell.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/ruleinfo.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/utils.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/workflow.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/benchmark.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/stats.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/wrapper.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/path_modifier.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/gui.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/jobs.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/cwl.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/script.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/report.css -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/decorators.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/resources.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/logging.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching/local.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching/hash.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching/remote.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching/__pycache__/local.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching/__pycache__/hash.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching/__pycache__/__init__.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/caching/__pycache__/remote.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/dag.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/gui.html -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/output_index.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/notebook.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/_version.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/io.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment/singularity.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment/conda.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment/env_modules.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment/containerize.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment/__pycache__/conda.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment/__pycache__/containerize.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment/__pycache__/__init__.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/deployment/__pycache__/singularity.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/XRootD.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/gfal.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/gridftp.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/FTP.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/GS.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/NCBI.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/S3Mocked.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/iRODS.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/webdav.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/HTTP.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/SFTP.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/EGA.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/S3.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/dropbox.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/remote/AzBlob.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/sourcecache.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/_version.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/parser.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/benchmark.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/notebook.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/wrapper.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/path_modifier.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/cwl.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/dag.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/ruleinfo.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/__main__.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/io.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/logging.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/script.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/stats.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/modules.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/jobs.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/output_index.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/scheduler.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/workflow.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/shell.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/__init__.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/persistence.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/utils.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/checkpoints.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/exceptions.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/resources.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__pycache__/rules.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/__main__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors/ga4gh_tes.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors/jobscript.sh -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors/google_lifesciences_helper.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors/google_lifesciences.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors/__init__.py -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors creating /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors/__pycache__/ga4gh_tes.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors/__pycache__/google_lifesciences.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors/__pycache__ copying /<>/.pybuild/cpython3_3.10_snakemake/build/snakemake/executors/__pycache__/__init__.cpython-310.pyc -> /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors/__pycache__ byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/report/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/checkpoints.py to checkpoints.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/sourcecache.py to sourcecache.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/rules.py to rules.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/modules.py to modules.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/common/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting/rules.py to rules.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting/links.py to links.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/linting/snakefiles.py to snakefiles.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/scheduler.py to scheduler.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests/templates/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/unit_tests/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/parser.py to parser.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/exceptions.py to exceptions.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/persistence.py to persistence.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/shell.py to shell.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/ruleinfo.py to ruleinfo.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/utils.py to utils.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/workflow.py to workflow.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/benchmark.py to benchmark.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/stats.py to stats.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/wrapper.py to wrapper.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/path_modifier.py to path_modifier.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/gui.py to gui.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/jobs.py to jobs.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/cwl.py to cwl.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/script.py to script.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/decorators.py to decorators.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/resources.py to resources.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/logging.py to logging.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching/local.py to local.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching/hash.py to hash.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching/remote.py to remote.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/caching/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/dag.py to dag.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/output_index.py to output_index.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/notebook.py to notebook.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/_version.py to _version.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/io.py to io.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/singularity.py to singularity.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/conda.py to conda.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/env_modules.py to env_modules.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/containerize.py to containerize.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/deployment/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/XRootD.py to XRootD.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/gfal.py to gfal.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/gridftp.py to gridftp.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/FTP.py to FTP.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/GS.py to GS.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/NCBI.py to NCBI.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/S3Mocked.py to S3Mocked.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/iRODS.py to iRODS.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/webdav.py to webdav.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/HTTP.py to HTTP.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/SFTP.py to SFTP.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/EGA.py to EGA.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/S3.py to S3.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/dropbox.py to dropbox.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/remote/AzBlob.py to AzBlob.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/__main__.py to __main__.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors/ga4gh_tes.py to ga4gh_tes.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors/google_lifesciences_helper.py to google_lifesciences_helper.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors/google_lifesciences.py to google_lifesciences.cpython-310.pyc byte-compiling /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake/executors/__init__.py to __init__.cpython-310.pyc running install_egg_info running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to /<>/debian/snakemake/usr/lib/python3.10/dist-packages/snakemake-6.15.5.egg-info Skipping SOURCES.txt running install_scripts Installing snakemake script to /<>/debian/snakemake/usr/bin Installing snakemake-bash-completion script to /<>/debian/snakemake/usr/bin dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild debian/rules execute_after_dh_installdocs make[1]: Entering directory '/<>' find debian -name '__pycache__' -o name '.gitignore' | xargs rm -rf find: paths must precede expression: `name' make[1]: Leaving directory '/<>' dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package snakemake-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing snakemake (in debian/snakemake); do_strip: , oemstrip: pkgstriptranslations: processing snakemake-doc (in debian/snakemake-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/snakemake/DEBIAN/control, package snakemake, directory debian/snakemake pkgstripfiles: Truncating usr/share/doc/snakemake/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package snakemake ... pkgstripfiles: No PNG files. dpkg-deb: building package 'snakemake' in '../snakemake_6.15.5-1_all.deb'. pkgstripfiles: processing control file: debian/snakemake-doc/DEBIAN/control, package snakemake-doc, directory debian/snakemake-doc pkgstripfiles: Truncating usr/share/doc/snakemake-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package snakemake-doc (to save build time) dpkg-deb: building package 'snakemake-doc' in '../snakemake-doc_6.15.5-1_all.deb'. dpkg-genbuildinfo --build=binary -O../snakemake_6.15.5-1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../snakemake_6.15.5-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-23T18:41:12Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ snakemake_6.15.5-1_amd64.changes: --------------------------------- Format: 1.8 Date: Sun, 20 Feb 2022 14:53:05 +0000 Source: snakemake Binary: snakemake snakemake-doc Built-For-Profiles: noudeb Architecture: all Version: 6.15.5-1 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Rebecca N. Palmer Description: snakemake - pythonic workflow management system snakemake-doc - documentation for pythonic workflow management system Changes: snakemake (6.15.5-1) unstable; urgency=medium . * Upstream bugfix release. * Remove drmaa Recommends, as that package is broken (see #951704). * Tests: skip peppy tests (not in Debian), use Python 3 subprocesses. 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+------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: snakemake Binary: snakemake snakemake-doc Architecture: all Version: 6.15.5-1 Checksums-Md5: d5756d1950ad90450e8e40c473706079 4817936 snakemake-doc_6.15.5-1_all.deb 91edda5212b2b8a366f95930de343a64 221284 snakemake_6.15.5-1_all.deb Checksums-Sha1: 868bb1b9c5cce75b5f92aa270d9e19a700f82381 4817936 snakemake-doc_6.15.5-1_all.deb 0ed7edc53aea4afffffaed75e2a36dccc65da4c7 221284 snakemake_6.15.5-1_all.deb Checksums-Sha256: 8047da6b5c8deaa55209e72fe885503c676066513edd697d6ad3f1df41742420 4817936 snakemake-doc_6.15.5-1_all.deb a1aa2ba2b72491aa49c3ac77bf260995c2ab468cd07d4b6cece8414d9f9c9de7 221284 snakemake_6.15.5-1_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 23 Jun 2022 18:41:12 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016), coinor-cbc (= 2.10.8+ds1-1), coinor-libcbc3 (= 2.10.8+ds1-1), coinor-libcgl1 (= 0.60.3+repack1-4), coinor-libclp1 (= 1.17.6-1), coinor-libcoinutils3v5 (= 2.11.4+repack1-2), coinor-libosi1v5 (= 0.108.6+repack1-2), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), cwltool (= 3.1.20220224085855-1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-python (= 5.20220403), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), docutils-common (= 0.17.1+dfsg-2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), environment-modules (= 5.1.1-1), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), fontconfig (= 2.13.1-4.4ubuntu1), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build1), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-2), fonts-lato (= 2.0-2.1), fonts-mathjax (= 2.7.9+dfsg-1), fonts-urw-base35 (= 20200910-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), gir1.2-glib-2.0 (= 1.72.0-1), git (= 1:2.36.1-1ubuntu1), git-man (= 1:2.36.1-1ubuntu1), graphviz (= 2.42.2-7), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hicolor-icon-theme (= 0.17-2), hostname (= 3.23ubuntu2), imagemagick (= 8:6.9.11.60+dfsg-1.3build2), imagemagick-6-common (= 8:6.9.11.60+dfsg-1.3build2), imagemagick-6.q16 (= 8:6.9.11.60+dfsg-1.3build2), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), javascript-common (= 11+nmu1), less (= 590-1build1), libacl1 (= 2.3.1-1), libann0 (= 1.1.2+doc-7build1), libaom3 (= 3.4.0-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3ubuntu1), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.50.20220615-4ubuntu1), libblas3 (= 3.10.1-2), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-2ubuntu1), libcdt5 (= 2.42.2-7), libcgraph6 (= 2.42.2-7), libcmark-gfm-extensions0.29.0.gfm.3 (= 0.29.0.gfm.3-3), libcmark-gfm0.29.0.gfm.3 (= 0.29.0.gfm.3-3), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libcurl3-gnutls (= 7.83.1-2), libcurl4 (= 7.83.1-2), libdatrie1 (= 0.2.13-2), libdav1d6 (= 1.0.0-2), libdb5.3 (= 5.3.28+dfsg1-0.9), libde265-0 (= 1.0.8-1), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdeflate0 (= 1.10-2), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), liberror-perl (= 0.17029-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfftw3-double3 (= 3.3.8-2ubuntu8), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreetype6 (= 2.12.1+dfsg-3), libfribidi0 (= 1.0.8-2ubuntu3.1), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgd3 (= 2.3.0-2ubuntu2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12.1.0-2ubuntu1), libgirepository-1.0-1 (= 1.72.0-1), libglib2.0-0 (= 2.72.2-2), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.6-2ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.19.2-2), libgts-0.7-5 (= 0.7.6+darcs121130-5), libgvc6 (= 2.42.2-7), libgvpr2 (= 2.42.2-7), libharfbuzz0b (= 2.7.4-1ubuntu4), libheif1 (= 1.12.0-2build3), libhogweed6 (= 3.7.3-1build2), libice6 (= 2:1.0.10-1build2), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2build1), libimagequant0 (= 2.17.0-1), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-2ubuntu1), libjbig0 (= 2.1-3.1build3), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjs-bootstrap (= 3.4.1+dfsg-2), libjs-bootstrap4 (= 4.6.1+dfsg1-3), libjs-d3 (= 3.5.17-4), libjs-es5-shim (= 4.6.7-1), libjs-highlight.js (= 9.18.5+dfsg1-2), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-jquery-datatables (= 1.11.5+dfsg-2), libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1), libjs-jquery-ui (= 1.13.1+dfsg-1), libjs-json (= 0~20210531+~1.0.8-1), libjs-mathjax (= 2.7.9+dfsg-1), libjs-microplugin.js (= 0.0.3+dfsg-1.1), libjs-modernizr (= 2.6.2+ds1-4), libjs-popper.js (= 1.16.1+ds-5), libjs-prettify (= 2015.12.04+dfsg-1.1), libjs-sifter.js (= 0.6.0+dfsg-2), libjs-sphinxdoc (= 4.5.0-4), libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1), libjs-underscore (= 1.13.3~dfsg+~1.11.4-1), libjson-perl (= 4.06000-1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblab-gamut1 (= 2.42.2-7), liblapack3 (= 3.10.1-2), liblcms2-2 (= 2.12~rc1-2build2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu1), liblqr-1-0 (= 0.4.2-2.1), liblsan0 (= 12.1.0-2ubuntu1), libltdl7 (= 2.4.7-4), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmagickcore-6.q16-6 (= 8:6.9.11.60+dfsg-1.3build2), libmagickwand-6.q16-6 (= 8:6.9.11.60+dfsg-1.3build2), libmd0 (= 1.0.4-1build1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libnuma1 (= 2.0.14-3ubuntu2), libopenjp2-7 (= 2.4.0-6), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpango-1.0-0 (= 1.50.7+ds-1), libpangocairo-1.0-0 (= 1.50.7+ds-1), libpangoft2-1.0-0 (= 1.50.7+ds-1), libpaper-utils (= 1.1.28build2), libpaper1 (= 1.1.28build2), libpathplan4 (= 2.42.2-7), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpixman-1-0 (= 0.40.0-1build4), libpng16-16 (= 1.6.37-5), libprocps8 (= 2:3.3.17-6ubuntu2), libpsl5 (= 0.21.0-1.2build2), libpython3-stdlib (= 3.10.4-0ubuntu2), libpython3.10-minimal (= 3.10.5-1), libpython3.10-stdlib (= 3.10.5-1), libquadmath0 (= 12.1.0-2ubuntu1), libraqm0 (= 0.7.0-4ubuntu1), libreadline8 (= 8.1.2-1.2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38-4ubuntu1), libsodium23 (= 1.0.18-1build2), libsqlite3-0 (= 3.38.5-1), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 249.11-0ubuntu4), libtasn1-6 (= 4.18.0-4build1), libtcl8.6 (= 8.6.12+dfsg-1build1), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff5 (= 4.4.0~rc1-1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtk8.6 (= 8.6.12-1build1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libuv1 (= 1.44.1-2), libwebp7 (= 1.2.2-2), libwebpdemux2 (= 1.2.2-2), libwebpmux3 (= 1.2.2-2), libx11-6 (= 2:1.7.5-1), libx11-data (= 2:1.7.5-1), libx265-199 (= 3.5-2), libxau6 (= 1:1.0.9-1build5), libxaw7 (= 2:1.0.14-1), libxcb-render0 (= 1.14-3ubuntu3), libxcb-shm0 (= 1.14-3ubuntu3), libxcb1 (= 1.14-3ubuntu3), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.4-1), libxml2 (= 2.9.14+dfsg-1), libxmu6 (= 2:1.1.3-3), libxpm4 (= 1:3.5.12-1build2), libxrender1 (= 1:0.9.10-1.1), libxslt1.1 (= 1.1.34-4build2), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1), libyaml-0-2 (= 0.2.2-1build2), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-27.28), littler (= 0.3.15-1), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), mailcap (= 3.70+nmu1ubuntu1), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), mime-support (= 3.66), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), node-bootstrap-sass (= 3.4.3-2), node-html5shiv (= 3.7.3+dfsg-4), node-normalize.css (= 8.0.1-5), openssl (= 3.0.3-5ubuntu3), pandoc (= 2.9.2.1-3ubuntu2), pandoc-data (= 2.9.2.1-3ubuntu2), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-6ubuntu2), python-babel-localedata (= 2.8.0+dfsg.1-7), python3 (= 3.10.4-0ubuntu2), python3-adal (= 1.2.7-1), python3-aiohttp (= 3.8.1-4build1), python3-aiosignal (= 1.2.0-2), python3-alabaster (= 0.7.12-1), python3-appdirs (= 1.4.4-2), python3-arcp (= 0.2.1-4), python3-argcomplete (= 2.0.0-1ubuntu1), python3-async-timeout (= 4.0.1-1), python3-attr (= 21.2.0-1), python3-avro (= 1.11.0+dfsg-1), python3-azure (= 20220407+git-1), python3-azure-storage (= 20220407+git-1), python3-babel (= 2.8.0+dfsg.1-7), python3-bcrypt (= 3.2.0-1build1), python3-biopython (= 1.79+dfsg-3), python3-blinker (= 1.4+dfsg1-0.5), python3-boto3 (= 1.23.8+dfsg-1), python3-botocore (= 1.26.8+repack-1), python3-cachecontrol (= 0.12.11-1), python3-certifi (= 2020.6.20-1), python3-cffi-backend (= 1.15.0-1build2), python3-chardet (= 4.0.0-2), python3-charset-normalizer (= 2.0.6-2), python3-click (= 8.0.3-1), python3-colorama (= 0.4.5-1), python3-coloredlogs (= 7.3-3), python3-commonmark (= 0.9.1-4), python3-configargparse (= 1.5.3-1), python3-connection-pool (= 0.0.3-2), python3-cryptography (= 3.4.8-2), python3-dateutil (= 2.8.1-6), python3-datrie (= 0.8.2-2), python3-decorator (= 4.4.2-0ubuntu1), python3-distutils (= 3.10.4-0ubuntu2), python3-docutils (= 0.17.1+dfsg-2), python3-dropbox (= 11.30.0-1), python3-fastjsonschema (= 2.15.1-2), python3-filelock (= 3.7.1-1), python3-flask (= 2.0.1-2ubuntu1), python3-frozenlist (= 1.2.0-1build1), python3-gi (= 3.42.1-1), python3-git (= 3.1.27-1), python3-gitdb (= 4.0.9-1), python3-humanfriendly (= 10.0-1), python3-idna (= 3.3-1), python3-imagesize (= 1.3.0-1), python3-importlib-metadata (= 4.6.4-1), python3-iniconfig (= 1.1.1-2), python3-isodate (= 0.6.1-1), python3-itsdangerous (= 2.1.2-1), python3-jinja2 (= 3.0.3-1), python3-jmespath (= 1.0.0-1), python3-jsonschema (= 3.2.0-0ubuntu2), python3-jupyter-core (= 4.10.0-1), python3-jwt (= 2.3.0-1), python3-lib2to3 (= 3.10.4-0ubuntu2), python3-lockfile (= 1:0.12.2-2.2), python3-lxml (= 4.8.0-1build1), python3-markupsafe (= 2.0.1-2build1), python3-minimal (= 3.10.4-0ubuntu2), python3-mistune0 (= 0.8.4-2), python3-more-itertools (= 8.10.0-2), python3-msal (= 1.18.0b1-1), python3-msal-extensions (= 1.0.0-1), python3-msgpack (= 1.0.3-1build1), python3-msrest (= 0.6.21-2), python3-msrestazure (= 0.6.4-1), python3-multidict (= 5.1.0-2), python3-mypy-extensions (= 0.4.3-3), python3-nacl (= 1.5.0-2), python3-nbformat (= 5.4.0-2), python3-networkx (= 2.4-4ubuntu2), python3-numpy (= 1:1.21.5-1build2), python3-oauthlib (= 3.2.0-1), python3-packaging (= 21.3-1), python3-pandas (= 1.3.5+dfsg-4), python3-pandas-lib (= 1.3.5+dfsg-4), python3-paramiko (= 2.10.4-1ubuntu1), python3-pil (= 9.1.1-1), python3-pkg-resources (= 59.6.0-1.2), python3-pluggy (= 1.0.0-1), python3-ply (= 3.11-5), python3-portalocker (= 2.2.1-1), python3-prov (= 2.0.0-2), python3-psutil (= 5.9.0-1build1), python3-pulp (= 2.6.0+dfsg-1), python3-py (= 1.10.0-1), python3-pydot (= 1.4.2-1build1), python3-pygments (= 2.11.2+dfsg-2), python3-pygraphviz (= 1.7-3build1), python3-pyparsing (= 3.0.7-2), python3-pyrsistent (= 0.18.1-1build1), python3-pytest (= 6.2.5-3ubuntu1), python3-pytools (= 2021.2.8-1), python3-pytz-deprecation-shim (= 0.1.0.post0-2), python3-ratelimiter (= 1.2.0.post0-2), python3-rdflib (= 6.1.1-1), python3-recommonmark (= 0.7.1+ds-1), python3-renderpm (= 3.6.9-1), python3-reportlab (= 3.6.9-1), python3-reportlab-accel (= 3.6.9-1), python3-requests (= 2.27.1+dfsg-1ubuntu2), python3-requests-mock (= 1.9.3-2), python3-requests-oauthlib (= 1.3.0+ds-0.1), python3-roman (= 3.3-1), python3-rpy2 (= 3.5.2-1), python3-ruamel.yaml (= 0.17.16-1), python3-ruamel.yaml.clib (= 0.2.6-1build1), python3-s3transfer (= 0.5.2-1), python3-schema-salad (= 8.2.20220204150214-1), python3-setuptools (= 59.6.0-1.2), python3-shellescape (= 3.4.1-5), python3-six (= 1.16.0-3ubuntu1), python3-smart-open (= 5.2.1-4), python3-smmap (= 5.0.0-1), python3-snowballstemmer (= 2.2.0-1build1), python3-sphinx (= 4.5.0-4), python3-sphinx-argparse (= 0.3.1-1), python3-sphinx-bootstrap-theme (= 0.8.1-1), python3-sphinx-rtd-theme (= 1.0.0+dfsg-1), python3-stone (= 3.3.1-1), python3-stopit (= 1.1.2-2), python3-tabulate (= 0.8.9-0ubuntu1), python3-toml (= 0.10.2-1), python3-toposort (= 1.6-1), python3-traitlets (= 5.3.0-1), python3-typing-extensions (= 3.10.0.2-1), python3-tz (= 2022.1-1), python3-tzlocal (= 4.2-1), python3-uamqp (= 1.5.3-1), python3-urllib3 (= 1.26.9-1), python3-werkzeug (= 2.0.2+dfsg1-1), python3-wrapt (= 1.13.3-1build1), python3-yaml (= 5.4.1-1ubuntu1), python3-yarl (= 1.7.2-1build1), python3-zipp (= 1.0.0-4), python3.10 (= 3.10.5-1), python3.10-minimal (= 3.10.5-1), r-base-core (= 4.2.0-1ubuntu1), r-cran-base64enc (= 0.1-3-3), r-cran-bslib (= 0.3.1+dfsg-2), r-cran-cachem (= 1.0.6-1), r-cran-commonmark (= 1.8.0-1), r-cran-crayon (= 1.5.1-1), r-cran-digest (= 0.6.29-1), r-cran-ellipsis (= 0.3.2-2), r-cran-evaluate (= 0.15-1), r-cran-fastmap (= 1.1.0-1), r-cran-fs (= 1.5.2+dfsg-1), r-cran-glue (= 1.6.2-1), r-cran-highr (= 0.9+dfsg-1), r-cran-htmltools (= 0.5.2-1), r-cran-httpuv (= 1.6.5+dfsg-1), r-cran-jquerylib (= 0.1.4+dfsg-3), r-cran-jsonlite (= 1.8.0+dfsg-1), r-cran-knitr (= 1.39+dfsg-1), r-cran-later (= 1.3.0+dfsg-1), r-cran-lifecycle (= 1.0.1-1), r-cran-littler (= 0.3.15-1), r-cran-magrittr (= 2.0.3-1), r-cran-mime (= 0.12-1), r-cran-pkgkitten (= 0.2.2-2), r-cran-promises (= 1.2.0.1+dfsg-1), r-cran-r6 (= 2.5.1-1), r-cran-rappdirs (= 0.3.3-1), r-cran-rcpp (= 1.0.8.3-1), r-cran-rlang (= 1.0.2-1), r-cran-rmarkdown (= 2.14+dfsg-2), r-cran-sass (= 0.4.1+dfsg-1), r-cran-shiny (= 1.6.0+dfsg-1), r-cran-sourcetools (= 0.1.7-3), r-cran-stringi (= 1.7.6-1build2), r-cran-stringr (= 1.4.0-2build1), r-cran-tinytex (= 0.39-1), r-cran-withr (= 2.5.0-1), r-cran-xfun (= 0.31-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.3.5-1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.30), sphinx-common (= 4.5.0-4), sphinx-rtd-theme-common (= 1.0.0+dfsg-1), stress (= 1.0.5-1), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), tcl8.6 (= 8.6.12+dfsg-1build1), tzdata (= 2022a-0ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu2), xdg-utils (= 1.1.3-4.1ubuntu2), xml-core (= 0.18+nmu1), xz-utils (= 5.2.5-2.1), zip (= 3.0-12build2), zlib1g (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1645368785" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ snakemake-doc_6.15.5-1_all.deb ------------------------------ new Debian package, version 2.0. size 4817936 bytes: control archive=5280 bytes. 966 bytes, 22 lines control 16126 bytes, 173 lines md5sums Package: snakemake-doc Source: snakemake Version: 6.15.5-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 13744 Depends: libjs-sphinxdoc (>= 4.3), sphinx-rtd-theme-common (>= 1.0.0+dfsg), libjs-mathjax Recommends: snakemake Breaks: snakemake (<< 6.14) Replaces: snakemake (<< 6.14) Section: doc Priority: optional Homepage: https://snakemake.readthedocs.io/ Description: documentation for pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment. . 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bytes, 12 lines * prerm #!/bin/sh Package: snakemake Version: 6.15.5-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1221 Depends: python3-appdirs, python3-configargparse, python3-connection-pool, python3-datrie, python3-docutils, python3-filelock, python3-git, python3-jsonschema, python3-nbformat, python3-psutil, python3-pulp (>= 2.0~), python3-ratelimiter, python3-requests, python3-smart-open (>= 3.0~), python3-stopit, python3-tabulate, python3-toposort, python3-wrapt, python3-yaml, python3:any, ca-certificates, python3-pkg-resources Recommends: cwltool, imagemagick, python3-tz, python3-yappi, python3-jinja2, python3-networkx, python3-pygments, python3-pygraphviz, python3-azure-storage, python3-biopython, python3-boto3, python3-botocore, python3-dropbox, python3-flask, python3-ftputil, python3-irodsclient, python3-kubernetes, python3-urllib3 Suggests: snakemake-doc Section: science Priority: optional Homepage: https://snakemake.readthedocs.io/ Description: pythonic workflow management system Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 69728 Build-Time: 940 Distribution: kinetic Host Architecture: amd64 Install-Time: 185 Job: snakemake_6.15.5-1.dsc Machine Architecture: amd64 Package: snakemake Package-Time: 1127 Source-Version: 6.15.5-1 Space: 69728 Status: successful Version: 6.15.5-1 -------------------------------------------------------------------------------- Finished at 2022-06-23T18:41:12Z Build needed 00:18:47, 69728k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076371 Scanning for processes to kill in build PACKAGEBUILD-24076371