https://launchpad.net/ubuntu/+archive/test-rebuild-20220617-kinetic/+build/24062822 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-048 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 23 Jun 13:52:36 ntpdate[1832]: adjust time server 10.211.37.1 offset -0.000034 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062822 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24062822 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062822 Starting target for build PACKAGEBUILD-24062822 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062822 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24062822 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062822 Adding trusted keys to build-PACKAGEBUILD-24062822 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062822 Updating target for build PACKAGEBUILD-24062822 Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 Packages [9632 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main Translation-en [4132 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5730 kB] Fetched 22.2 MB in 3s (6565 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 84 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 79.8 MB of archives. After this operation, 5300 kB of additional disk space will be used. Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libatomic1 amd64 12.1.0-2ubuntu1 [10.4 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libubsan1 amd64 12.1.0-2ubuntu1 [969 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libquadmath0 amd64 12.1.0-2ubuntu1 [152 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblsan0 amd64 12.1.0-2ubuntu1 [1060 kB] Get:11 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:12 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:13 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libitm1 amd64 12.1.0-2ubuntu1 [29.5 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgomp1 amd64 12.1.0-2ubuntu1 [125 kB] Get:16 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-12-base amd64 12.1.0-2ubuntu1 [18.8 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-s1 amd64 12.1.0-2ubuntu1 [54.2 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcc1-0 amd64 12.1.0-2ubuntu1 [46.6 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++6 amd64 12.1.0-2ubuntu1 [679 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.2 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.7.9-4 [12.1 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.38.5-1 [646 kB] 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http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-3ubuntu1 [9910 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-3ubuntu1 [20.8 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 27 [12.4 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-1ubuntu1 [34.5 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.8 MB in 5s (17.6 MB/s) 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Setting up libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up gcc-11 (11.3.0-3ubuntu1) ... Setting up g++-11 (11.3.0-3ubuntu1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24062822 amd64 kinetic -c chroot:build-PACKAGEBUILD-24062822 --arch=amd64 --dist=kinetic --nolog -A readseq_1-14.dsc Initiating build PACKAGEBUILD-24062822 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lgw01-amd64-048.buildd +==============================================================================+ | readseq 1-14 (amd64) Thu, 23 Jun 2022 13:52:59 +0000 | +==============================================================================+ Package: readseq Version: 1-14 Source Version: 1-14 Distribution: kinetic Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24062822/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/readseq-Uk2JXO/resolver-JaEMe4' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- readseq_1-14.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/readseq-Uk2JXO/readseq-1' with '<>' I: NOTICE: Log filtering will replace 'build/readseq-Uk2JXO' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), ncbi-tools-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), ncbi-tools-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [373 B] Get:5 copy:/<>/apt_archive ./ Packages [455 B] Fetched 1785 B in 0s (135 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libncbi6 libncbi6-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db ncbi-data po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl ncbi-tools-bin libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libncbi6 libncbi6-dev libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db ncbi-data po-debconf sbuild-build-depends-main-dummy 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 31.5 MB of archives. After this operation, 133 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [682 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 libelf1 amd64 0.187-1 [51.3 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu71 amd64 71.1-3 [10.6 MB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxml2 amd64 2.9.14+dfsg-1 [756 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdextrautils amd64 2.38-4ubuntu1 [71.1 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic-mgc amd64 1:5.41-4 [257 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic1 amd64 1:5.41-4 [87.3 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 file amd64 1:5.41-4 [21.5 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext-base amd64 0.21-6 [37.9 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 groff-base amd64 1.22.4-8build1 [955 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpipeline1 amd64 1.5.6-1 [23.1 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 man-db amd64 2.10.2-1 [1187 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsigsegv2 amd64 2.13-1ubuntu3 [14.6 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 m4 amd64 1.4.18-5ubuntu2 [199 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 autopoint all 0.21-6 [421 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdebhelper-perl all 13.7.1ubuntu1 [66.9 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtool all 2.4.7-4 [166 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-override-perl all 0.09-3 [9756 B] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdw1 amd64 0.187-1 [247 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 debugedit amd64 1:5.0-4build1 [47.2 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 dwz amd64 0.14-1build2 [105 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext amd64 0.21-6 [862 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 debhelper all 13.7.1ubuntu1 [940 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/universe amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3519 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libncbi6 amd64 6.1.20170106+dfsg1-9 [3992 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libncbi6-dev amd64 6.1.20170106+dfsg1-9 [5472 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.5 MB in 1s (32.6 MB/s) Selecting previously unselected package libelf1:amd64. 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Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-27.28 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 base-passwd_3.5.52build1 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systemd-sysv_249.11-0ubuntu4 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: readseq Binary: readseq Architecture: any Version: 1-14 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/readseq Vcs-Git: https://salsa.debian.org/med-team/readseq.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), ncbi-tools-dev Package-List: readseq deb science optional arch=any Checksums-Sha1: 474839186eec28f650ac89a33829673fa40c3bbb 54557 readseq_1.orig.tar.gz e196c0db4e7f82412ff21a63a063a94639351627 17508 readseq_1-14.debian.tar.xz Checksums-Sha256: b704d7a12c5d834390f3ed4233f1409c5f1ed53b0b9accf5ab632a513de1183c 54557 readseq_1.orig.tar.gz a735d888ceff0b59afae28ca8053d8a4cfaba36fe9db8312cd4044cba2e20211 17508 readseq_1-14.debian.tar.xz Files: 3973daff73375953369c31c5c1661699 54557 readseq_1.orig.tar.gz 921f561313637bd04ec500297b0ec3e4 17508 readseq_1-14.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+caD4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEuuA//UtllR5lThSFx60wVSJ+wWim4ZjZgYPLZ BvvEnejNTeDYjqFr8CFQJBzLgJU3w4Vn2S6yDsCd/uL84NkfUjKbQU9+7LDWhHez 835tQbTYr/Zn/r2RSRmoob8ykOU3dsj2+LMxQj/Qc43AGuIMSEb74+Vk7vaiBdK0 sLe9xIOv0yZBnLxl8oEuiO+uVoA3r0iuIN9QCdwlE0uRpdOBTjq1ObcmNJ9rd2TO PP/c7e9W+mGxa3n4n9XYypQ8jqUwoyNGHhuzybVl3S9x7jZ/BERqpleD2PVkkuIc 92dPOb41JUu3hdraSnLdCPWqBOykKRgnO80r4Xj4a+L98kHU1USKUq43Zuq5CP0O B2VCEz6GpUVYl+IfuCV7AVNmPu24CVh3UyvXQkl4T8/5WvLSdlqHgCixLLCJ7qkF x8eyyqJqWRfvKmXKnP0DVvu5diFmzgNsiuEt6o4zkcH4bN4G7Zd3jfVmzJ9kkZJh 5O8Htu11Ad+qBrj1aELIGrVFqLJekFDDT6qVtnAQja/WL5Y7qo2cYSh39MdU0jYJ gAUtSRFDBWgE7niBk44SoSF4hiXHPI97b+JLKPOWfMTCzOGEivBVRrsdMC6Un/mU OIKAyrP2/uWI/AjB41irf8WO4P4Ul49i839vftLdULQ/l1vQTJDVDW4jbFt4hVVA K1uulitsefc= =YXoY -----END PGP SIGNATURE----- gpgv: Signature made Fri Oct 30 19:23:42 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./readseq_1-14.dsc dpkg-source: info: extracting readseq in /<> dpkg-source: info: unpacking readseq_1.orig.tar.gz dpkg-source: info: unpacking readseq_1-14.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20-Formats.patch dpkg-source: info: applying 20-Makefile.patch dpkg-source: info: applying 30-arb-code-patches.patch dpkg-source: info: applying 552830.patch dpkg-source: info: applying gcc-4.6_format-security.patch dpkg-source: info: applying enable_tests.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying buffer_overflow.patch dpkg-source: info: applying fix_tests.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24062822 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24062822 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24062822 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package readseq dpkg-buildpackage: info: source version 1-14 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f *.o core test.* readseq make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f readseq make[1]: Leaving directory '/<>' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' Compiling readseq with NCBI toolkit support and ARB patches gcc -o readseq -I/usr/include/ncbi -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -DNCBI -I/usr/include/ncbi -DARB readseq.c ureadseq.c ureadasn.c -lncbi -lncbiobj -lncbicdr -lncbiacc -lncbitool -lncbimmdb -lncbiid1 -lnetcli -lm -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now readseq.c: In function ‘formatstr’: readseq.c:267:41: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 267 | case kASNseqset : return formats[kASN1-1]; | ~~~~~~~^~~~~~~~~ readseq.c:269:45: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 269 | case kPhylipSequential: return formats[kPhylip-1]; | ~~~~~~~^~~~~~~~~~~ readseq.c:273:22: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 273 | else return formats[format-1]; | ~~~~~~~^~~~~~~~~~ readseq.c: In function ‘Nlm_Main’: readseq.c:801:5: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] 801 | gets(oname= onamestore); | ^~~~ | fgets readseq.c:936:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 936 | sprintf( stemp,"%s_%d", oname, whichSeq); | ~^ ~~~~~~~~ | | | | int long int | %ld readseq.c:938:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 938 | fprintf( stderr,"Writing sequence %d to file %s\n", whichSeq, stemp); | ~^ ~~~~~~~~ | | | | int long int | %ld readseq.c:980:39: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 980 | fprintf( stderr, "Sequence %d, length= %d, checksum= %X, format= %s, id= %s\n", | ~^ | | | int | %ld 981 | whichSeq, seqlen, checksum, formatstr(format), seqidptr); | ~~~~~~~~ | | | long int readseq.c:980:51: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 980 | fprintf( stderr, "Sequence %d, length= %d, checksum= %X, format= %s, id= %s\n", | ~^ | | | int | %ld 981 | whichSeq, seqlen, checksum, formatstr(format), seqidptr); | ~~~~~~ | | | long int readseq.c:980:65: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 980 | fprintf( stderr, "Sequence %d, length= %d, checksum= %X, format= %s, id= %s\n", | ~^ | | | unsigned int | %lX 981 | whichSeq, seqlen, checksum, formatstr(format), seqidptr); | ~~~~~~~~ | | | long unsigned int readseq.c:998:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 998 | if (phylvers >= 4) fprintf(foo," %d %d\n", i, seqlen); | ~^ ~ | | | | int long int | %ld readseq.c:998:56: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 998 | if (phylvers >= 4) fprintf(foo," %d %d\n", i, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:999:39: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 999 | else fprintf(foo," %d %d YF\n", i, seqlen); | ~^ ~ | | | | int long int | %ld readseq.c:999:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 999 | else fprintf(foo," %d %d YF\n", i, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:1117:31: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1117 | fprintf(foo,"\n %s MSF: %d Type: N %s Check: %d ..\n\n", /* GSt + RL */ | ~^ | | | int | %ld 1118 | cp, seqlen, timestr, checkall); | ~~~~~~ | | | long int readseq.c:1117:55: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long unsigned int’ [-Wformat=] 1117 | fprintf(foo,"\n %s MSF: %d Type: N %s Check: %d ..\n\n", /* GSt + RL */ | ~^ | | | int | %ld 1118 | cp, seqlen, timestr, checkall); | ~~~~~~~~ | | | long unsigned int readseq.c:1133:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1133 | if (phylvers >= 4) fprintf(foo," %d %d\n", seqout, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:1134:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1134 | else fprintf(foo," %d %d YF\n", seqout, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c:1158:49: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1158 | fprintf(foo," dimensions ntax=%d nchar=%d;\n", seqout, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld readseq.c: In function ‘chooseFormat’: readseq.c:429:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 429 | fgets(sform, 127, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~~ readseq.c: In function ‘Nlm_Main’: readseq.c:783:5: warning: ignoring return value of ‘tmpnam’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 783 | tmpnam(tempname); | ^~~~~~~~~~~~~~~~ readseq.c:937:13: warning: ignoring return value of ‘freopen’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 937 | freopen( stemp, "w", fout); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ureadseq.c: In function ‘seqFileFormatFp’: ureadseq.c:1535:19: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘long int *’ [-Wformat=] 1535 | sscanf( sp, "%d%d", &nspp, &nlen); | ~^ ~~~~~ | | | | int * long int * | %ld ureadseq.c:1535:21: warning: format ‘%d’ expects argument of type ‘int *’, but argument 4 has type ‘long int *’ [-Wformat=] 1535 | sscanf( sp, "%d%d", &nspp, &nlen); | ~^ ~~~~~ | | | | int * long int * | %ld ureadseq.c: In function ‘writeSeq’: ureadseq.c:1784:22: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1784 | sprintf(numform, "%d", seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1813:43: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1813 | fprintf(outf,"LOCUS %s %d bp\n", idword, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1814:38: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1814 | fprintf(outf,"DEFINITION %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1814:48: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1814 | fprintf(outf,"DEFINITION %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1828:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1828 | fprintf(outf,"TITLE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1828:52: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1828 | fprintf(outf,"TITLE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1838:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1838 | for (j= 5; j<=width; j += 5) fprintf(outf,"%10d",j); | ~~~^ ~ | | | | | long int | int | %10ld ureadseq.c:1848:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1848 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1848:36: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1848 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1857:31: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1857 | fprintf(outf,"DE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1857:41: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1857 | fprintf(outf,"DE %s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1858:37: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1858 | fprintf(outf,"SQ %d BP\n", seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1869:38: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1869 | fprintf(outf," %s Length: %d (today) Check: %d ..\n", idword, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1869:58: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1869 | fprintf(outf," %s Length: %d (today) Check: %d ..\n", idword, seqlen, checksum); | ~^ ~~~~~~~~ | | | | int long unsigned int | %ld ureadseq.c:1878:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1878 | fprintf(outf,"; DNA sequence %s, %d bases, %X checksum.\n;\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1878:52: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1878 | fprintf(outf,"; DNA sequence %s, %d bases, %X checksum.\n;\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1884:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1884 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1884:36: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1884 | fprintf(outf,"%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1915:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1915 | fprintf(outf," repr raw, mol %s, length %d, topology linear,\n", cp, seqlen); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1937:41: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1937 | fprintf(outf,"[Name: %-16s Len:%6d Check: %8X]\n", idword, seqlen, checksum); | ~~^ ~~~~~~ | | | | int long int | %6ld ureadseq.c:1937:53: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1937 | fprintf(outf,"[Name: %-16s Len:%6d Check: %8X]\n", idword, seqlen, checksum); | ~~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %8lX ureadseq.c:1954:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1954 | fprintf(outf,"Name: %-16s Len:%6d Check: %8X\n", idword, seqlen, checksum); | ~~^ ~~~~~~ | | | | int long int | %6ld ureadseq.c:1954:54: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1954 | fprintf(outf,"Name: %-16s Len:%6d Check: %8X\n", idword, seqlen, checksum); | ~~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %8lX ureadseq.c:1960:40: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1960 | fprintf(outf," Name: %-16s Len:%6d Check: %5d Weight: 1.00\n", | ~~^ | | | int | %6ld 1961 | idword, seqlen, checksum); | ~~~~~~ | | | long int ureadseq.c:1960:52: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1960 | fprintf(outf," Name: %-16s Len:%6d Check: %5d Weight: 1.00\n", | ~~^ | | | int | %5ld 1961 | idword, seqlen, checksum); | ~~~~~~~~ | | | long unsigned int ureadseq.c:1972:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 1972 | fprintf(outf,";%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:1972:37: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 1972 | fprintf(outf,";%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:1979:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 1979 | fprintf(outf,"%4d %-60s\n",seqlen,seqname); | ~~^ ~~~~~~ | | | | int long int | %4ld ureadseq.c:2002:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 2002 | fprintf(outf,">%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~ | | | | int long int | %ld ureadseq.c:2002:37: warning: format ‘%X’ expects argument of type ‘unsigned int’, but argument 5 has type ‘long unsigned int’ [-Wformat=] 2002 | fprintf(outf,">%s, %d bases, %X checksum.\n", seqname, seqlen, checksum); | ~^ ~~~~~~~~ | | | | unsigned int long unsigned int | %lX ureadseq.c:2043:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 2043 | if (numline==1) fprintf(outf,"%-9d ",i+1); | ~~~^ ~~~ | | | | int long int | %-9ld ureadseq.c: In function ‘readPAUPinterleaved’: ureadseq.c:213:22: warning: ‘%s’ directive writing up to 255 bytes into a region of size between 246 and 251 [-Wformat-overflow=] 213 | sprintf(si, " %d) %s\n", V->nseq, s); | ^~ In file included from /usr/include/stdio.h:894, from ureadseq.c:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__sprintf_chk’ output between 7 and 267 bytes into a destination of size 256 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ureadseq.c: In function ‘writeSeq’: ureadseq.c:2007:45: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 2 and 7 [-Wformat-overflow=] 2007 | if (*nameform==0) sprintf(nameform, "%%%d.%ds ",namewidth,namewidth); | ^~ ureadseq.c:2007:39: note: directive argument in the range [-32768, 32767] 2007 | if (*nameform==0) sprintf(nameform, "%%%d.%ds ",namewidth,namewidth); | ^~~~~~~~~~~ In file included from /usr/include/stdio.h:894, from ureadseq.c:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__sprintf_chk’ output between 7 and 17 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ureadasn.c: In function ‘listASNSeqs’: ureadasn.c:189:24: warning: passing argument 1 of ‘AsnIoOpen’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 189 | if ((aip = AsnIoOpen(filename, inIsBinary?"rb":"r")) == NULL) goto errxit; | ^~~~~~~~ In file included from /usr/include/ncbi/ncbi.h:57, from ureadasn.c:13: /usr/include/ncbi/asn.h:384:54: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘const char *’ 384 | NLM_EXTERN AsnIoPtr LIBCALL AsnIoOpen PROTO((CharPtr file_name, CharPtr mode)); /usr/include/ncbi/ncbilcl.h:192:18: note: in definition of macro ‘PROTO’ 192 | #define PROTO(x) x /* Prototypes are acceptable */ | ^ ureadasn.c: In function ‘readASNSeq’: ureadasn.c:261:24: warning: passing argument 1 of ‘AsnIoOpen’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 261 | if ((aip = AsnIoOpen(filename, inIsBinary?"rb":"r")) == NULL) goto errxit; | ^~~~~~~~ In file included from /usr/include/ncbi/ncbi.h:57, from ureadasn.c:13: /usr/include/ncbi/asn.h:384:54: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘const char *’ 384 | NLM_EXTERN AsnIoPtr LIBCALL AsnIoOpen PROTO((CharPtr file_name, CharPtr mode)); /usr/include/ncbi/ncbilcl.h:192:18: note: in definition of macro ‘PROTO’ 192 | #define PROTO(x) x /* Prototypes are acceptable */ | ^ ureadasn.c: In function ‘listASNSeqs’: ureadasn.c:190:31: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | for (i=0; ifp); /* this may mess up asn routines... */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ureadasn.c: In function ‘readASNSeq’: ureadasn.c:262:31: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 262 | for (i=0; ifp); /* this may mess up asn routines... */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:894, from ureadasn.c:8: In function ‘fgets’, inlined from ‘readASNSeq’ at ureadasn.c:262:31: /usr/include/x86_64-linux-gnu/bits/stdio2.h:268:12: warning: call to ‘*__fgets_chk’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 268 | return __fgets_chk_warn (__s, sz, __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘fgets’, inlined from ‘readASNSeq’ at ureadasn.c:262:31, inlined from ‘Nlm_Main’ at readseq.c:958:19: /usr/include/x86_64-linux-gnu/bits/stdio2.h:268:12: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 268 | return __fgets_chk_warn (__s, sz, __n, __stream); | ^ /usr/bin/ld: /tmp/ccPSClA2.ltrans0.ltrans.o: in function `Nlm_Main': ./readseq.c:801: warning: the `gets' function is dangerous and should not be used. /usr/bin/ld: ./readseq.c:783: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>' dh_auto_test make -j4 test make[1]: Entering directory '/<>' Test for general read/write of all chars: ./readseq -p alphabet.std -otest.alpha diff test.alpha alphabet.std Test for valid format conversions: ./readseq -v -p -f=ig nucleic.std -otest.ig Sequence 1, length= 228, checksum= 1B5655D0, format= 20. Vienna, id= nucleic/amino test ./readseq -v -p -f=gb test.ig -otest.gb Sequence 1, length= 228, checksum= 1B5655D0, format= 1. IG/Stanford, id= nucleic/amino ./readseq -v -p -f=nbrf test.gb -otest.nbrf Sequence 1, length= 228, checksum= 1B5655D0, format= 2. GenBank/GB, id= nucleic/amino 228 bp ./readseq -v -p -f=embl test.nbrf -otest.embl Sequence 1, length= 228, checksum= 1B5655D0, format= 3. NBRF, id= nucleic/amino ./readseq -v -p -f=gcg test.embl -otest.gcg Sequence 1, length= 228, checksum= 1B5655D0, format= 4. EMBL, id= nucleic/amino ./readseq -v -p -f=strider test.gcg -otest.strider Sequence 1, length= 228, checksum= 1B5655D0, format= 5. GCG, id= nucleic/amino ./readseq -v -p -f=fitch test.strider -otest.fitch Sequence 1, length= 228, checksum= 1B5655D0, format= 6. DNAStrider, id= nucleic/amino, 228 bases, 1B5655D0 checksum. ./readseq -v -p -f=fasta test.fitch -otest.fasta Sequence 1, length= 228, checksum= 1B5655D0, format= 7. Fitch, id= nucleic/amino, 228 bases, 1B5655D0 checksum. ./readseq -v -p -f=pir test.fasta -otest.pir Sequence 1, length= 228, checksum= 1B5655D0, format= 8. Pearson/Fasta, id= nucleic/amino, 228 bases, 1B5655D0 checksum. ./readseq -v -p -f=ig test.pir -otest.ig-b Sequence 1, length= 228, checksum= 1B5655D0, format= 14. PIR/CODATA, id= nucleic/amino, diff test.ig test.ig-b 1,2c1,2 < ;nucleic/amino test, 228 bases, 1B5655D0 checksum. < nucleic/amino --- > ;nucleic/amino, , 228 bases, 1B5655D0 checksum. > nucleic/amino, make[1]: [Makefile:70: test] Error 1 (ignored) Test for multiple-sequence format conversions: ./readseq -p -f=ig multi.std -otest.m-ig ./readseq -p -f=gb test.m-ig -otest.m-gb ./readseq -p -f=nbrf test.m-gb -otest.m-nbrf ./readseq -p -f=embl test.m-nbrf -otest.m-embl ./readseq -p -f=fasta test.m-embl -otest.m-fasta ./readseq -p -f=pir test.m-fasta -otest.m-pir ./readseq -p -f=msf test.m-pir -otest.m-msf ./readseq -p -f=paup test.m-msf -otest.m-paup ./readseq -p -f=ig test.m-paup -otest.m-ig-b diff test.m-ig test.m-ig-b 1,2c1,2 < ;acarr58sst , 183 bases, 64754A4D checksum. < acarr58sst --- > ;acarr58ss, 183 bases, 64754A4D checksum. > acarr58ss 7c7 < ;amgrrbst , 183 bases, C886D2FB checksum. --- > ;amgrrbst, 183 bases, C886D2FB checksum. 13c13 < ;bmorrbst , 183 bases, 3E9C23D6 checksum. --- > ;bmorrbst, 183 bases, 3E9C23D6 checksum. 19c19 < ;crerrbst , 183 bases, AC88A337 checksum. --- > ;crerrbst, 183 bases, AC88A337 checksum. 25,26c25,26 < ;ddirr58sst , 183 bases, 1E3D23B8 checksum. < ddirr58sst --- > ;ddirr58ss, 183 bases, 1E3D23B8 checksum. > ddirr58ss make[1]: [Makefile:82: test] Error 1 (ignored) Expect differences in the header lines due to different format headers. If any sequence lines differ, or if the checksums differ, there is a problem. ---------------------- To clean up test files, command me: make clean make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/readseq/ make -j4 install DESTDIR=/<>/debian/readseq AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' install readseq /<>/debian/readseq/usr/bin install *.std /<>/debian/readseq/usr/share/doc/readseq/tests install Makefile /<>/debian/readseq/usr/share/doc/readseq/tests make[1]: Leaving directory '/<>' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a c528cd68ecde3cdffffe30d3c5d1014cd28dddd9 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 149 pkgstriptranslations: processing readseq (in debian/readseq); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/readseq/DEBIAN/control, package readseq, directory debian/readseq pkgstripfiles: Truncating usr/share/doc/readseq/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package readseq ... pkgstripfiles: No PNG files. dpkg-deb: building package 'readseq' in '../readseq_1-14_amd64.deb'. dpkg-genbuildinfo --build=binary -O../readseq_1-14_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../readseq_1-14_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-23T13:53:14Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ readseq_1-14_amd64.changes: --------------------------- Format: 1.8 Date: Fri, 30 Oct 2020 20:20:15 +0100 Source: readseq Binary: readseq Built-For-Profiles: noudeb Architecture: amd64 Version: 1-14 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: readseq - Conversion between sequence formats Changes: readseq (1-14) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Refer to specific version of license GPL-2+. Checksums-Sha1: 4fcd28a1b8d9bf8fdd611f9bd44004abbca1c4b7 5846 readseq_1-14_amd64.buildinfo 05c7f13db5ec49d86f9666751c53659ddba0c63f 55580 readseq_1-14_amd64.deb Checksums-Sha256: 987fc0cfa731788f32a8b52fdceac79e5b2bac3b27e3adf7c099fc98373d7b45 5846 readseq_1-14_amd64.buildinfo 00b48714d5debf84a13ff79d4cb1ffbccf9726ea7d19977bf18cccac0db775bc 55580 readseq_1-14_amd64.deb Files: e8ce912068c794f20ffb74be24a6cf9a 5846 science optional readseq_1-14_amd64.buildinfo 990f01ccd875d69cddea6a644876f275 55580 science optional readseq_1-14_amd64.deb /<>/readseq_1-14_amd64.changes.new could not be renamed to /<>/readseq_1-14_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: readseq Binary: readseq Architecture: amd64 Version: 1-14 Checksums-Md5: 990f01ccd875d69cddea6a644876f275 55580 readseq_1-14_amd64.deb Checksums-Sha1: 05c7f13db5ec49d86f9666751c53659ddba0c63f 55580 readseq_1-14_amd64.deb Checksums-Sha256: 00b48714d5debf84a13ff79d4cb1ffbccf9726ea7d19977bf18cccac0db775bc 55580 readseq_1-14_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 23 Jun 2022 13:53:14 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3ubuntu1), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.50.20220615-4ubuntu1), libblkid1 (= 2.38-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.7.9-4), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-2ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.6-2ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgssapi-krb5-2 (= 1.19.2-2), libhogweed6 (= 3.7.3-1build2), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2build1), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-2ubuntu1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblsan0 (= 12.1.0-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libncbi6 (= 6.1.20170106+dfsg1-9), libncbi6-dev (= 6.1.20170106+dfsg1-9), libnettle8 (= 3.7.3-1build2), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libquadmath0 (= 12.1.0-2ubuntu1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 249.11-0ubuntu4), libtasn1-6 (= 4.18.0-4build1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-27.28), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncbi-data (= 6.1.20170106+dfsg1-9), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1604085615" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ readseq_1-14_amd64.deb ---------------------- new Debian package, version 2.0. size 55580 bytes: control archive=1012 bytes. 649 bytes, 15 lines control 1030 bytes, 15 lines md5sums Package: readseq Version: 1-14 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 118 Depends: libc6 (>= 2.34), libncbi6 (>= 6.1.20030421) Section: science Priority: optional Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/ Description: Conversion between sequence formats Reads and writes nucleic/protein sequences in various formats. Data files may have multiple sequences. Readseq is particularly useful as it automatically detects many sequence formats, and converts between them. drwxr-xr-x root/root 0 2020-10-30 19:20 ./ drwxr-xr-x root/root 0 2020-10-30 19:20 ./usr/ drwxr-xr-x root/root 0 2020-10-30 19:20 ./usr/bin/ -rwxr-xr-x root/root 63752 2020-10-30 19:20 ./usr/bin/readseq drwxr-xr-x root/root 0 2020-10-30 19:20 ./usr/share/ drwxr-xr-x root/root 0 2020-10-30 19:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-30 19:20 ./usr/share/doc/readseq/ -rw-r--r-- root/root 13869 2020-10-30 19:20 ./usr/share/doc/readseq/Formats.gz -rw-r--r-- root/root 2018 2020-10-30 19:20 ./usr/share/doc/readseq/README.Debian -rw-r--r-- root/root 323 2020-10-30 19:20 ./usr/share/doc/readseq/README.test -rw-r--r-- root/root 2923 1993-02-01 00:00 ./usr/share/doc/readseq/Readme.gz -rw-r--r-- root/root 4138 1992-12-30 00:00 ./usr/share/doc/readseq/Readseq.help.gz -rw-r--r-- root/root 3731 1992-12-30 00:00 ./usr/share/doc/readseq/Stdfiles -rw-r--r-- root/root 1597 2020-10-30 19:20 ./usr/share/doc/readseq/changelog.Debian.gz -rw-r--r-- root/root 996 2020-10-30 19:20 ./usr/share/doc/readseq/copyright drwxr-xr-x root/root 0 2020-10-30 19:20 ./usr/share/doc/readseq/tests/ -rw-r--r-- root/root 2278 2020-10-30 19:20 ./usr/share/doc/readseq/tests/Makefile -rw-r--r-- root/root 135 2020-10-30 19:20 ./usr/share/doc/readseq/tests/alphabet.std -rw-r--r-- root/root 1180 1992-12-30 00:00 ./usr/share/doc/readseq/tests/multi.std -rw-r--r-- root/root 253 1992-12-30 00:00 ./usr/share/doc/readseq/tests/nucleic.std -rw-r--r-- root/root 131 1992-12-30 00:00 ./usr/share/doc/readseq/tests/upper.std drwxr-xr-x root/root 0 2020-10-30 19:20 ./usr/share/man/ drwxr-xr-x root/root 0 2020-10-30 19:20 ./usr/share/man/man1/ -rw-r--r-- root/root 2003 2020-10-30 19:20 ./usr/share/man/man1/readseq.1.gz drwxr-xr-x root/root 0 2020-10-30 19:20 ./usr/share/readseq/ lrwxrwxrwx root/root 0 2020-10-30 19:20 ./usr/share/readseq/readseq_help.gz -> ../doc/readseq/Readseq.help.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 1388 Build-Time: 8 Distribution: kinetic Host Architecture: amd64 Install-Time: 6 Job: readseq_1-14.dsc Machine Architecture: amd64 Package: readseq Package-Time: 15 Source-Version: 1-14 Space: 1388 Status: successful Version: 1-14 -------------------------------------------------------------------------------- Finished at 2022-06-23T13:53:14Z Build needed 00:00:15, 1388k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062822 Scanning for processes to kill in build PACKAGEBUILD-24062822