https://launchpad.net/ubuntu/+archive/test-rebuild-20220617-kinetic/+build/24062269 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-020 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 23 Jun 13:47:23 ntpdate[1858]: adjust time server 10.211.37.1 offset -0.000897 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062269 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24062269 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062269 Starting target for build PACKAGEBUILD-24062269 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062269 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24062269 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062269 Adding trusted keys to build-PACKAGEBUILD-24062269 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062269 Updating target for build PACKAGEBUILD-24062269 Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 Packages [9632 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main Translation-en [4132 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5730 kB] Fetched 22.2 MB in 12s (1809 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 84 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 79.8 MB of archives. After this operation, 5300 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:2 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:5 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 libatomic1 amd64 12.1.0-2ubuntu1 [10.4 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libubsan1 amd64 12.1.0-2ubuntu1 [969 kB] Get:8 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libquadmath0 amd64 12.1.0-2ubuntu1 [152 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblsan0 amd64 12.1.0-2ubuntu1 [1060 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 libitm1 amd64 12.1.0-2ubuntu1 [29.5 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgomp1 amd64 12.1.0-2ubuntu1 [125 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-12-base amd64 12.1.0-2ubuntu1 [18.8 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-s1 amd64 12.1.0-2ubuntu1 [54.2 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcc1-0 amd64 12.1.0-2ubuntu1 [46.6 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++6 amd64 12.1.0-2ubuntu1 [679 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:23 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:26 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:27 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:32 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.2 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.7.9-4 [12.1 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.38.5-1 [646 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssl3 amd64 3.0.3-5ubuntu3 [1897 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main amd64 openssl amd64 3.0.3-5ubuntu3 [1175 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng16-16 amd64 1.6.37-5 [187 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 xz-utils amd64 5.2.5-2.1 [83.8 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 g++-11 amd64 11.3.0-3ubuntu1 [11.3 MB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++-11-dev amd64 11.3.0-3ubuntu1 [2074 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasan6 amd64 11.3.0-3ubuntu1 [2265 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11 amd64 11.3.0-3ubuntu1 [20.0 MB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-11-dev amd64 11.3.0-3ubuntu1 [2484 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtsan0 amd64 11.3.0-3ubuntu1 [2241 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-3ubuntu1 [9910 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-3ubuntu1 [20.8 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 27 [12.4 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-1ubuntu1 [34.5 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.8 MB in 7s (11.1 MB/s) 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Setting up libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up gcc-11 (11.3.0-3ubuntu1) ... Setting up g++-11 (11.3.0-3ubuntu1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24062269 amd64 kinetic -c chroot:build-PACKAGEBUILD-24062269 --arch=amd64 --dist=kinetic --nolog -A racon_1.5.0-2.dsc Initiating build PACKAGEBUILD-24062269 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lgw01-amd64-020.buildd +==============================================================================+ | racon 1.5.0-2 (amd64) Thu, 23 Jun 2022 13:49:19 +0000 | +==============================================================================+ Package: racon Version: 1.5.0-2 Source Version: 1.5.0-2 Distribution: kinetic Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24062269/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/racon-QAFNZF/resolver-RkHcOx' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- racon_1.5.0-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/racon-QAFNZF/racon-1.5.0' with '<>' I: NOTICE: Log filtering will replace 'build/racon-QAFNZF' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [440 B] Get:5 copy:/<>/apt_archive ./ Packages [522 B] Fetched 1919 B in 0s (53.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13 libbioparser-dev libbiosoup-dev libbrotli1 libcereal-dev libcurl4 libdebhelper-perl libdw1 libedlib-dev libedlib1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgtest-dev libicu71 libjsoncpp25 libldap-2.5-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libspoa-dev libspoa7.0.0 libssh-4 libsub-override-perl libthread-pool-dev libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf rampler rapidjson-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build cmake-format dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl rapidjson-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz emacsen-common file gettext gettext-base googletest groff-base intltool-debian libarchive-zip-perl libarchive13 libbioparser-dev libbiosoup-dev libbrotli1 libcereal-dev libcurl4 libdebhelper-perl libdw1 libedlib-dev libedlib1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgtest-dev libicu71 libjsoncpp25 libldap-2.5-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libspoa-dev libspoa7.0.0 libssh-4 libsub-override-perl libthread-pool-dev libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf rampler rapidjson-dev sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 64 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu kinetic/universe amd64 googletest all 1.11.0-3 [541 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libbiosoup-dev all 0.10.0-4 [7882 B] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9 [164 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libbioparser-dev all 3.0.15-2 [9204 B] Get:56 http://ftpmaster.internal/ubuntu kinetic/universe amd64 rapidjson-dev all 1.1.0+dfsg2-7 [95.0 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcereal-dev all 1.3.1+dfsg-1 [222 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libedlib1 amd64 1.2.7-3build1 [18.1 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libedlib-dev amd64 1.2.7-3build1 [22.0 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libgtest-dev amd64 1.11.0-3 [250 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libspoa7.0.0 amd64 4.0.7+ds-2 [71.1 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libspoa-dev amd64 4.0.7+ds-2 [4654 B] Get:63 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libthread-pool-dev all 3.0.2-1 [4412 B] Get:64 http://ftpmaster.internal/ubuntu kinetic/universe amd64 rampler amd64 2.0.0-2 [22.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.0 MB in 1s (19.9 MB/s) Selecting previously unselected package libelf1:amd64. 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Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-27.28 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 base-passwd_3.5.52build1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: racon Binary: racon Architecture: any Version: 1.5.0-2 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille Homepage: https://github.com/lbcb-sci/racon Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/racon Vcs-Git: https://salsa.debian.org/med-team/racon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler Package-List: racon deb science optional arch=any Checksums-Sha1: c508bea6f7b627e1796f2017669a8e99ed548ddd 3084154 racon_1.5.0.orig.tar.gz cf54ee99e97df1057673c05f7b3d58952d5f1580 20624 racon_1.5.0-2.debian.tar.xz Checksums-Sha256: 58fdbbd88f0990b18e3139280aa4fa81e138a9cf0761edd66c43982af784d395 3084154 racon_1.5.0.orig.tar.gz 19c4d9481ee805f26f0cae2a5ae0800fab33e42f416269feabed23c119c08794 20624 racon_1.5.0-2.debian.tar.xz Files: de1982c33464fc7cec8a172931a6cf00 3084154 racon_1.5.0.orig.tar.gz 3b5531b60b2fdd728e40bc79ad51f902 20624 racon_1.5.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmHO7R8SHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nx3BEP/3NKtrEf/5QFvI2aQMliRQJhMaCOFzSW 5FWEzO0rmGndog3yS72kSzUoE3Va91OK3pZpx4A3N6Uo/Hvj/nyI/8cV/UiM271b +3/JXMIbRrvDMMvNSkjiMXT1qHPJE69mEmfEuO4HJGQh9rZ0nQlZJfSfD4wZ4K4H OiqMAwf21I0Rdc6OpR53hiOaYEVvGx73q2Zxp8eOV1Ptm1KKtj9uKg3p3uls639r C1N/LPEvcFN2y/Uo40YSqYw7+Zlo8K7S8xF3HHnxHMgoC+ETaQZI+RDfJ5w3/Qas l3RaMFfRWzFfpGfaDX+CF35XzlNCaSy38lcj1cjtM0gtltWc3AIzTNYCuuETE3M3 zPwmwZncRd6ve0MbFjZ2wQhDbr3ndfdpdUpCMaJCLOISGveazmmFe3oDGDu3UO4i uvOGR2JLtbdDUqv3xD/3GbJ3jq60O73PcroMOkoTObSIOrmf1ISTAQc30bNCoRIX 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---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24062269 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24062269 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24062269 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 11.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-x86_64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/<>' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 10%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /<>/src/overlap.cpp [ 30%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o [ 30%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o [ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /<>/src/logger.cpp /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /<>/src/polisher.cpp /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /<>/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -pthread -std=c++11 -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /<>/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake --color= cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/c++ -DVERSION=\"1.5.0\" -I/<>/src -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c 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CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start 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[----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (3 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (12 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (26 ms) [----------] 5 tests from RaconInitializeTest (47 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000819 s [racon::Polisher::initialize] loaded sequences 0.089610 s [racon::Polisher::initialize] loaded overlaps 0.000501 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.378240 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.404244 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.563024 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.593609 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.653885 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.693406 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.813980 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.935496 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.018248 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.092336 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.167606 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.271422 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.408120 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.434121 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.579398 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.755419 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.755447 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.951438 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.011419 s [racon::Polisher::initialize] aligning overlaps [====================] 2.129781 s [racon::Polisher::initialize] transformed data into windows 0.002030 s [racon::Polisher::polish] generating consensus [=> ] 0.211503 s [racon::Polisher::polish] generating consensus [==> ] 0.305014 s [racon::Polisher::polish] generating consensus [===> ] 0.361703 s [racon::Polisher::polish] generating consensus [====> ] 0.419540 s [racon::Polisher::polish] generating consensus [=====> ] 0.500560 s [racon::Polisher::polish] generating consensus [======> ] 0.504019 s [racon::Polisher::polish] generating consensus [=======> ] 0.615508 s [racon::Polisher::polish] generating consensus [========> ] 0.695556 s [racon::Polisher::polish] generating consensus [=========> ] 0.744452 s [racon::Polisher::polish] generating consensus [==========> ] 0.841330 s [racon::Polisher::polish] generating consensus [===========> ] 1.062803 s [racon::Polisher::polish] generating consensus [============> ] 1.062872 s [racon::Polisher::polish] generating consensus [=============> ] 1.303546 s [racon::Polisher::polish] generating consensus [==============> ] 1.508956 s [racon::Polisher::polish] generating consensus [===============> ] 1.652213 s [racon::Polisher::polish] generating consensus [================> ] 1.744461 s [racon::Polisher::polish] generating consensus [=================> ] 1.850927 s [racon::Polisher::polish] generating consensus [==================> ] 2.021284 s [racon::Polisher::polish] generating consensus [===================>] 2.073344 s [racon::Polisher::polish] generating consensus [====================] 2.467649 s [racon::Polisher::] total = 4.737194 s [ OK ] RaconPolishingTest.ConsensusWithQualities (4775 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000655 s [racon::Polisher::initialize] loaded sequences 0.032584 s [racon::Polisher::initialize] loaded overlaps 0.000415 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.094553 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.139163 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.183504 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.240527 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.279321 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.315243 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.418471 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.542422 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.635486 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.715775 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.738268 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.879641 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.982266 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.038850 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.112590 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.201418 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.253482 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.320699 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.460457 s [racon::Polisher::initialize] aligning overlaps [====================] 1.539806 s [racon::Polisher::initialize] transformed data into windows 0.000427 s [racon::Polisher::polish] generating consensus [=> ] 0.157086 s [racon::Polisher::polish] generating consensus [==> ] 0.341023 s [racon::Polisher::polish] generating consensus [===> ] 0.436087 s [racon::Polisher::polish] generating consensus [====> ] 0.625992 s [racon::Polisher::polish] generating consensus [=====> ] 0.630631 s [racon::Polisher::polish] generating consensus [======> ] 0.698703 s [racon::Polisher::polish] generating consensus [=======> ] 0.816781 s [racon::Polisher::polish] generating consensus [========> ] 0.873594 s [racon::Polisher::polish] generating consensus [=========> ] 0.968035 s [racon::Polisher::polish] generating consensus [==========> ] 1.126292 s [racon::Polisher::polish] generating consensus [===========> ] 1.275805 s [racon::Polisher::polish] generating consensus [============> ] 1.499024 s [racon::Polisher::polish] generating consensus [=============> ] 1.757081 s [racon::Polisher::polish] generating consensus [==============> ] 2.006970 s [racon::Polisher::polish] generating consensus [===============> ] 2.221629 s [racon::Polisher::polish] generating consensus [================> ] 2.324075 s [racon::Polisher::polish] generating consensus [=================> ] 2.448135 s [racon::Polisher::polish] generating consensus [==================> ] 2.554341 s [racon::Polisher::polish] generating consensus [===================>] 2.705320 s [racon::Polisher::polish] generating consensus [====================] 3.397655 s [racon::Polisher::] total = 5.025748 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (5037 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000692 s [racon::Polisher::initialize] loaded sequences 0.092060 s [racon::Polisher::initialize] loaded overlaps 0.025841 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.019154 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.019395 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.019559 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.019726 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.019874 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.020019 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.020165 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.020310 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.020469 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.020634 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.020782 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.020928 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.021092 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.041096 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.041378 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.041532 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.041678 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.041838 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.042004 s [racon::Polisher::initialize] aligning overlaps [====================] 0.042154 s [racon::Polisher::initialize] transformed data into windows 0.002017 s [racon::Polisher::polish] generating consensus [=> ] 0.109041 s [racon::Polisher::polish] generating consensus [==> ] 0.259680 s [racon::Polisher::polish] generating consensus [===> ] 0.363094 s [racon::Polisher::polish] generating consensus [====> ] 0.483669 s [racon::Polisher::polish] generating consensus [=====> ] 0.499396 s [racon::Polisher::polish] generating consensus [======> ] 0.576912 s [racon::Polisher::polish] generating consensus [=======> ] 0.576948 s [racon::Polisher::polish] generating consensus [========> ] 0.581475 s [racon::Polisher::polish] generating consensus [=========> ] 0.640957 s [racon::Polisher::polish] generating consensus [==========> ] 0.736932 s [racon::Polisher::polish] generating consensus [===========> ] 0.855920 s [racon::Polisher::polish] generating consensus [============> ] 1.020952 s [racon::Polisher::polish] generating consensus [=============> ] 1.288923 s [racon::Polisher::polish] generating consensus [==============> ] 1.520463 s [racon::Polisher::polish] generating consensus [===============> ] 1.740955 s [racon::Polisher::polish] generating consensus [================> ] 1.853026 s [racon::Polisher::polish] generating consensus [=================> ] 2.060294 s [racon::Polisher::polish] generating consensus [==================> ] 2.060332 s [racon::Polisher::polish] generating consensus [===================>] 2.180967 s [racon::Polisher::polish] generating consensus [====================] 2.765494 s [racon::Polisher::] total = 2.945665 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (2963 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000650 s [racon::Polisher::initialize] loaded sequences 0.037434 s [racon::Polisher::initialize] loaded overlaps 0.039126 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.059561 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.086456 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.086486 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.086498 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.086509 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.086520 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.086531 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.086541 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.086552 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.086562 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.086572 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.086583 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.086593 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.086603 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.088725 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.088747 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.088758 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.088768 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.088778 s [racon::Polisher::initialize] aligning overlaps [====================] 0.088788 s [racon::Polisher::initialize] transformed data into windows 0.000468 s [racon::Polisher::polish] generating consensus [=> ] 0.198085 s [racon::Polisher::polish] generating consensus [==> ] 0.312267 s [racon::Polisher::polish] generating consensus [===> ] 0.425766 s [racon::Polisher::polish] generating consensus [====> ] 0.554524 s [racon::Polisher::polish] generating consensus [=====> ] 0.580500 s [racon::Polisher::polish] generating consensus [======> ] 0.657420 s [racon::Polisher::polish] generating consensus [=======> ] 0.713241 s [racon::Polisher::polish] generating consensus [========> ] 0.849917 s [racon::Polisher::polish] generating consensus [=========> ] 0.909911 s [racon::Polisher::polish] generating consensus [==========> ] 1.081872 s [racon::Polisher::polish] generating consensus [===========> ] 1.339231 s [racon::Polisher::polish] generating consensus [============> ] 1.485023 s [racon::Polisher::polish] generating consensus [=============> ] 1.854968 s [racon::Polisher::polish] generating consensus [==============> ] 1.940310 s [racon::Polisher::polish] generating consensus [===============> ] 2.106037 s [racon::Polisher::polish] generating consensus [================> ] 2.311086 s [racon::Polisher::polish] generating consensus [=================> ] 2.573895 s [racon::Polisher::polish] generating consensus [==================> ] 2.589216 s [racon::Polisher::polish] generating consensus [===================>] 2.760776 s [racon::Polisher::polish] generating consensus [====================] 3.216913 s [racon::Polisher::] total = 3.414130 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (3422 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000790 s [racon::Polisher::initialize] loaded sequences 0.056917 s [racon::Polisher::initialize] loaded overlaps 0.000600 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.141048 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.222681 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.261890 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.342665 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.394904 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.421421 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.494122 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.585845 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.652374 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.689869 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.740057 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.831758 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.914920 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.963754 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.051919 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.096290 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.156356 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.223695 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.289861 s [racon::Polisher::initialize] aligning overlaps [====================] 1.393423 s [racon::Polisher::initialize] transformed data into windows 0.001772 s [racon::Polisher::polish] generating consensus [=> ] 0.422609 s [racon::Polisher::polish] generating consensus [==> ] 0.422652 s [racon::Polisher::polish] generating consensus [===> ] 0.833112 s [racon::Polisher::polish] generating consensus [====> ] 0.833165 s [racon::Polisher::polish] generating consensus [=====> ] 0.833180 s [racon::Polisher::polish] generating consensus [======> ] 0.875732 s [racon::Polisher::polish] generating consensus [=======> ] 0.960781 s [racon::Polisher::polish] generating consensus [========> ] 1.057599 s [racon::Polisher::polish] generating consensus [=========> ] 1.217141 s [racon::Polisher::polish] generating consensus [==========> ] 1.443565 s [racon::Polisher::polish] generating consensus [===========> ] 1.537116 s [racon::Polisher::polish] generating consensus [============> ] 2.021135 s [racon::Polisher::polish] generating consensus [=============> ] 2.440492 s [racon::Polisher::polish] generating consensus [==============> ] 2.693138 s [racon::Polisher::polish] generating consensus [===============> ] 3.137260 s [racon::Polisher::polish] generating consensus [================> ] 3.189628 s [racon::Polisher::polish] generating consensus [=================> ] 3.373100 s [racon::Polisher::polish] generating consensus [==================> ] 3.539782 s [racon::Polisher::polish] generating consensus [===================>] 3.848769 s [racon::Polisher::polish] generating consensus [====================] 4.439304 s [racon::Polisher::] total = 5.926629 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (6003 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000661 s [racon::Polisher::initialize] loaded sequences 0.154582 s [racon::Polisher::initialize] loaded overlaps 0.000363 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.178854 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.350821 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.353851 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.443001 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.553277 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.553307 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.646293 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.716899 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.797122 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.886007 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.926684 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.981810 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.093726 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.179311 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.230590 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.306827 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.386864 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.476242 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.542445 s [racon::Polisher::initialize] aligning overlaps [====================] 1.586328 s [racon::Polisher::initialize] transformed data into windows 0.001962 s [racon::Polisher::polish] generating consensus [=> ] 0.085963 s [racon::Polisher::polish] generating consensus [==> ] 0.206564 s [racon::Polisher::polish] generating consensus [===> ] 0.241354 s [racon::Polisher::polish] generating consensus [====> ] 0.311309 s [racon::Polisher::polish] generating consensus [=====> ] 0.386505 s [racon::Polisher::polish] generating consensus [======> ] 0.428059 s [racon::Polisher::polish] generating consensus [=======> ] 0.539712 s [racon::Polisher::polish] generating consensus [========> ] 0.539794 s [racon::Polisher::polish] generating consensus [=========> ] 0.590243 s [racon::Polisher::polish] generating consensus [==========> ] 0.759614 s [racon::Polisher::polish] generating consensus [===========> ] 0.864178 s [racon::Polisher::polish] generating consensus [============> ] 0.973734 s [racon::Polisher::polish] generating consensus [=============> ] 1.163490 s [racon::Polisher::polish] generating consensus [==============> ] 1.328912 s [racon::Polisher::polish] generating consensus [===============> ] 1.454530 s [racon::Polisher::polish] generating consensus [================> ] 1.582502 s [racon::Polisher::polish] generating consensus [=================> ] 1.738566 s [racon::Polisher::polish] generating consensus [==================> ] 1.804173 s [racon::Polisher::polish] generating consensus [===================>] 1.950504 s [racon::Polisher::polish] generating consensus [====================] 2.457307 s [racon::Polisher::] total = 4.218410 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (4242 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.064125 s [racon::Polisher::initialize] loaded sequences 0.085062 s [racon::Polisher::initialize] loaded overlaps 0.015848 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.159369 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.186213 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.295862 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.326280 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.382485 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.422052 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.508968 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.539879 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.594800 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.687659 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.751877 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.830838 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.930811 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.023209 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.107864 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.197675 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.271908 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.372130 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.424609 s [racon::Polisher::initialize] aligning overlaps [====================] 1.594076 s [racon::Polisher::initialize] transformed data into windows 0.003613 s [racon::Polisher::polish] generating consensus [=> ] 0.126307 s [racon::Polisher::polish] generating consensus [==> ] 0.176238 s [racon::Polisher::polish] generating consensus [===> ] 0.273498 s [racon::Polisher::polish] generating consensus [====> ] 0.273589 s [racon::Polisher::polish] generating consensus [=====> ] 0.328474 s [racon::Polisher::polish] generating consensus [======> ] 0.397402 s [racon::Polisher::polish] generating consensus [=======> ] 0.439078 s [racon::Polisher::polish] generating consensus [========> ] 0.439198 s [racon::Polisher::polish] generating consensus [=========> ] 0.629430 s [racon::Polisher::polish] generating consensus [==========> ] 0.629575 s [racon::Polisher::polish] generating consensus [===========> ] 0.631485 s [racon::Polisher::polish] generating consensus [============> ] 0.631634 s [racon::Polisher::polish] generating consensus [=============> ] 0.715385 s [racon::Polisher::polish] generating consensus [==============> ] 0.715495 s [racon::Polisher::polish] generating consensus [===============> ] 0.858421 s [racon::Polisher::polish] generating consensus [================> ] 0.858510 s [racon::Polisher::polish] generating consensus [=================> ] 0.993494 s [racon::Polisher::polish] generating consensus [==================> ] 1.042925 s [racon::Polisher::polish] generating consensus [===================>] 1.106628 s [racon::Polisher::polish] generating consensus [====================] 1.128471 s [racon::Polisher::] total = 2.894722 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (2913 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.117263 s [racon::Polisher::initialize] loaded sequences 0.158077 s [racon::Polisher::initialize] loaded overlaps 0.031502 s [racon::Polisher::initialize] aligning overlaps [=> ] 2.306718 s [racon::Polisher::initialize] aligning overlaps [==> ] 4.133436 s [racon::Polisher::initialize] aligning overlaps [===> ] 5.431547 s [racon::Polisher::initialize] aligning overlaps [====> ] 6.835277 s [racon::Polisher::initialize] aligning overlaps [=====> ] 7.573844 s [racon::Polisher::initialize] aligning overlaps [======> ] 8.490068 s [racon::Polisher::initialize] aligning overlaps [=======> ] 10.047878 s [racon::Polisher::initialize] aligning overlaps [========> ] 11.850479 s [racon::Polisher::initialize] aligning overlaps [=========> ] 13.290791 s [racon::Polisher::initialize] aligning overlaps [==========> ] 14.440655 s [racon::Polisher::initialize] aligning overlaps [===========> ] 15.559279 s [racon::Polisher::initialize] aligning overlaps [============> ] 17.055927 s [racon::Polisher::initialize] aligning overlaps [=============> ] 18.941158 s [racon::Polisher::initialize] aligning overlaps [==============> ] 20.365116 s [racon::Polisher::initialize] aligning overlaps [===============> ] 21.955028 s [racon::Polisher::initialize] aligning overlaps [================> ] 23.766927 s [racon::Polisher::initialize] aligning overlaps [=================> ] 25.311637 s [racon::Polisher::initialize] aligning overlaps [==================> ] 26.653900 s [racon::Polisher::initialize] aligning overlaps [===================>] 28.535161 s [racon::Polisher::initialize] aligning overlaps [====================] 30.211981 s [racon::Polisher::initialize] transformed data into windows 0.118571 s [racon::Polisher::polish] generating consensus [=> ] 3.054227 s [racon::Polisher::polish] generating consensus [==> ] 5.458168 s [racon::Polisher::polish] generating consensus [===> ] 8.021832 s [racon::Polisher::polish] generating consensus [====> ] 10.163390 s [racon::Polisher::polish] generating consensus [=====> ] 12.899988 s [racon::Polisher::polish] generating consensus [======> ] 16.306097 s [racon::Polisher::polish] generating consensus [=======> ] 18.978756 s [racon::Polisher::polish] generating consensus [========> ] 21.372109 s [racon::Polisher::polish] generating consensus [=========> ] 23.772419 s [racon::Polisher::polish] generating consensus [==========> ] 27.226784 s [racon::Polisher::polish] generating consensus [===========> ] 30.249414 s [racon::Polisher::polish] generating consensus [============> ] 33.282723 s [racon::Polisher::polish] generating consensus [=============> ] 35.540648 s [racon::Polisher::polish] generating consensus [==============> ] 38.655402 s [racon::Polisher::polish] generating consensus [===============> ] 41.705559 s [racon::Polisher::polish] generating consensus [================> ] 43.420524 s [racon::Polisher::polish] generating consensus [=================> ] 46.172517 s [racon::Polisher::polish] generating consensus [==================> ] 48.916932 s [racon::Polisher::polish] generating consensus [===================>] 51.581653 s [racon::Polisher::polish] generating consensus [====================] 54.754386 s [racon::Polisher::] total = 85.398225 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (85411 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.030620 s [racon::Polisher::initialize] loaded sequences 0.035988 s [racon::Polisher::initialize] loaded overlaps 0.013113 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.134294 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.790246 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.378019 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.898143 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.431901 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.168559 s [racon::Polisher::initialize] aligning overlaps [=======> ] 5.184992 s [racon::Polisher::initialize] aligning overlaps [========> ] 6.211300 s [racon::Polisher::initialize] aligning overlaps [=========> ] 7.455356 s [racon::Polisher::initialize] aligning overlaps [==========> ] 8.444626 s [racon::Polisher::initialize] aligning overlaps [===========> ] 9.374235 s [racon::Polisher::initialize] aligning overlaps [============> ] 10.572995 s [racon::Polisher::initialize] aligning overlaps [=============> ] 11.589115 s [racon::Polisher::initialize] aligning overlaps [==============> ] 12.731045 s [racon::Polisher::initialize] aligning overlaps [===============> ] 14.021423 s [racon::Polisher::initialize] aligning overlaps [================> ] 14.953892 s [racon::Polisher::initialize] aligning overlaps [=================> ] 15.834739 s [racon::Polisher::initialize] aligning overlaps [==================> ] 16.796830 s [racon::Polisher::initialize] aligning overlaps [===================>] 18.055092 s [racon::Polisher::initialize] aligning overlaps [====================] 19.180670 s [racon::Polisher::initialize] transformed data into windows 0.017607 s [racon::Polisher::polish] generating consensus [=> ] 3.745789 s [racon::Polisher::polish] generating consensus [==> ] 6.574923 s [racon::Polisher::polish] generating consensus [===> ] 9.745626 s [racon::Polisher::polish] generating consensus [====> ] 12.367753 s [racon::Polisher::polish] generating consensus [=====> ] 15.962260 s [racon::Polisher::polish] generating consensus [======> ] 19.136478 s [racon::Polisher::polish] generating consensus [=======> ] 22.197595 s [racon::Polisher::polish] generating consensus [========> ] 24.876685 s [racon::Polisher::polish] generating consensus [=========> ] 27.852072 s [racon::Polisher::polish] generating consensus [==========> ] 31.684391 s [racon::Polisher::polish] generating consensus [===========> ] 34.212949 s [racon::Polisher::polish] generating consensus [============> ] 36.843039 s [racon::Polisher::polish] generating consensus [=============> ] 39.563189 s [racon::Polisher::polish] generating consensus [==============> ] 43.055934 s [racon::Polisher::polish] generating consensus [===============> ] 47.249772 s [racon::Polisher::polish] generating consensus [================> ] 49.499476 s [racon::Polisher::polish] generating consensus [=================> ] 53.644487 s [racon::Polisher::polish] generating consensus [==================> ] 57.960399 s [racon::Polisher::polish] generating consensus [===================>] 61.885574 s [racon::Polisher::polish] generating consensus [====================] 65.848462 s [racon::Polisher::] total = 85.131039 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (85175 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.067791 s [racon::Polisher::initialize] loaded sequences 0.120038 s [racon::Polisher::initialize] loaded overlaps 0.022647 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.504942 s [racon::Polisher::initialize] aligning overlaps [==> ] 2.696434 s [racon::Polisher::initialize] aligning overlaps [===> ] 3.707791 s [racon::Polisher::initialize] aligning overlaps [====> ] 4.635620 s [racon::Polisher::initialize] aligning overlaps [=====> ] 5.347269 s [racon::Polisher::initialize] aligning overlaps [======> ] 6.077732 s [racon::Polisher::initialize] aligning overlaps [=======> ] 7.035647 s [racon::Polisher::initialize] aligning overlaps [========> ] 8.496174 s [racon::Polisher::initialize] aligning overlaps [=========> ] 9.783857 s [racon::Polisher::initialize] aligning overlaps [==========> ] 10.975805 s [racon::Polisher::initialize] aligning overlaps [===========> ] 12.061337 s [racon::Polisher::initialize] aligning overlaps [============> ] 13.631740 s [racon::Polisher::initialize] aligning overlaps [=============> ] 14.963478 s [racon::Polisher::initialize] aligning overlaps [==============> ] 16.080862 s [racon::Polisher::initialize] aligning overlaps [===============> ] 17.335023 s [racon::Polisher::initialize] aligning overlaps [================> ] 18.626835 s [racon::Polisher::initialize] aligning overlaps [=================> ] 19.979760 s [racon::Polisher::initialize] aligning overlaps [==================> ] 21.130778 s [racon::Polisher::initialize] aligning overlaps [===================>] 22.376091 s [racon::Polisher::initialize] aligning overlaps [====================] 23.353339 s [racon::Polisher::initialize] transformed data into windows 0.120439 s [racon::Polisher::polish] generating consensus [=> ] 2.766368 s [racon::Polisher::polish] generating consensus [==> ] 4.398390 s [racon::Polisher::polish] generating consensus [===> ] 6.550931 s [racon::Polisher::polish] generating consensus [====> ] 7.997966 s [racon::Polisher::polish] generating consensus [=====> ] 9.180443 s [racon::Polisher::polish] generating consensus [======> ] 11.354576 s [racon::Polisher::polish] generating consensus [=======> ] 13.954982 s [racon::Polisher::polish] generating consensus [========> ] 16.386769 s [racon::Polisher::polish] generating consensus [=========> ] 18.847044 s [racon::Polisher::polish] generating consensus [==========> ] 22.273434 s [racon::Polisher::polish] generating consensus [===========> ] 25.055230 s [racon::Polisher::polish] generating consensus [============> ] 28.515009 s [racon::Polisher::polish] generating consensus [=============> ] 30.987223 s [racon::Polisher::polish] generating consensus [==============> ] 33.473508 s [racon::Polisher::polish] generating consensus [===============> ] 35.912239 s [racon::Polisher::polish] generating consensus [================> ] 37.216634 s [racon::Polisher::polish] generating consensus [=================> ] 39.836150 s [racon::Polisher::polish] generating consensus [==================> ] 42.351582 s [racon::Polisher::polish] generating consensus [===================>] 44.702708 s [racon::Polisher::polish] generating consensus [====================] 46.197032 s [racon::Polisher::] total = 69.891659 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (69908 ms) [----------] 10 tests from RaconPolishingTest (269859 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (269907 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/racon/usr/bin/racon make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake e05f3d87073c8570ee84f31466551f88354f6df5 dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake INFO: pkgstriptranslations version 149 pkgstriptranslations: processing racon (in debian/racon); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/racon/DEBIAN/control, package racon, directory debian/racon pkgstripfiles: Running PNG optimization (using 4 cpus) for package racon ... pkgstripfiles: No PNG files. dpkg-deb: building package 'racon' in '../racon_1.5.0-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-2_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../racon_1.5.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-23T13:55:52Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ racon_1.5.0-2_amd64.changes: ---------------------------- Format: 1.8 Date: Fri, 31 Dec 2021 17:08:40 +0530 Source: racon Binary: racon Built-For-Profiles: noudeb Architecture: amd64 Version: 1.5.0-2 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: racon - consensus module for raw de novo DNA assembly of long uncorrected Changes: racon (1.5.0-2) unstable; urgency=medium . * Team Upload. [ Andreas Tille ] * Add run-unit-test as user example * DEP3 . [ Nilesh Patra ] * Revert md5sum based change in autopkgtest * Versioned B-D on edlib Checksums-Sha1: d16ae4167e60515ccb85897d27c27b6d34bd2dd4 6853 racon_1.5.0-2_amd64.buildinfo 1366f756d61d5c13d8125155891fb4470c5bdaed 3112272 racon_1.5.0-2_amd64.deb Checksums-Sha256: 4b74ff9bba65945e696706d30a4445a4f8faf20b31d7b98eb9582704c30674ef 6853 racon_1.5.0-2_amd64.buildinfo ba7e8f03a927f9cd7f144e7f2e4171c35464574ff7ffefaf67ae1b0bbbd8a47d 3112272 racon_1.5.0-2_amd64.deb Files: 71a48fd877eb23587455431be868d50b 6853 science optional racon_1.5.0-2_amd64.buildinfo ca80f911655a59ce0cdbb475dca9d976 3112272 science optional racon_1.5.0-2_amd64.deb /<>/racon_1.5.0-2_amd64.changes.new could not be renamed to /<>/racon_1.5.0-2_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: racon Binary: racon Architecture: amd64 Version: 1.5.0-2 Checksums-Md5: ca80f911655a59ce0cdbb475dca9d976 3112272 racon_1.5.0-2_amd64.deb Checksums-Sha1: 1366f756d61d5c13d8125155891fb4470c5bdaed 3112272 racon_1.5.0-2_amd64.deb Checksums-Sha256: ba7e8f03a927f9cd7f144e7f2e4171c35464574ff7ffefaf67ae1b0bbbd8a47d 3112272 racon_1.5.0-2_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 23 Jun 2022 13:55:51 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), cmake (= 3.23.2-1ubuntu1), cmake-data (= 3.23.2-1ubuntu1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-elpa-helper (= 2.0.9ubuntu1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), emacsen-common (= 3.0.4), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), googletest (= 1.11.0-3), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1ubuntu1), libasan6 (= 11.3.0-3ubuntu1), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.50.20220615-4ubuntu1), libbioparser-dev (= 3.0.15-2), libbiosoup-dev (= 0.10.0-4), libblkid1 (= 2.38-4ubuntu1), libbrotli1 (= 1.0.9-2build6), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.7.9-4), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-2ubuntu1), libcereal-dev (= 1.3.1+dfsg-1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libcurl4 (= 7.83.1-2), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libedlib-dev (= 1.2.7-3build1), libedlib1 (= 1.2.7-3build1), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.6-2ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgssapi-krb5-2 (= 1.19.2-2), libgtest-dev (= 1.11.0-3), libhogweed6 (= 3.7.3-1build2), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2build1), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-2ubuntu1), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu1), liblsan0 (= 12.1.0-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libprocps8 (= 2:3.3.17-6ubuntu2), libpsl5 (= 0.21.0-1.2build2), libquadmath0 (= 12.1.0-2ubuntu1), librhash0 (= 1.4.2-1ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libspoa-dev (= 4.0.7+ds-2), libspoa7.0.0 (= 4.0.7+ds-2), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 249.11-0ubuntu4), libtasn1-6 (= 4.18.0-4build1), libthread-pool-dev (= 3.0.2-1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libuv1 (= 1.44.1-2), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-27.28), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-6ubuntu2), rampler (= 2.0.0-2), rapidjson-dev (= 1.1.0+dfsg2-7), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1640950720" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ racon_1.5.0-2_amd64.deb ----------------------- new Debian package, version 2.0. size 3112272 bytes: control archive=1821 bytes. 2200 bytes, 42 lines control 1249 bytes, 16 lines md5sums Package: racon Version: 1.5.0-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3159 Depends: libc6 (>= 2.34), libedlib1 (>= 1.2.7-3~), libgcc-s1 (>= 3.3.1), libspoa7.0.0 (>= 4.0.5+ds), libstdc++6 (>= 12), zlib1g (>= 1:1.1.4) Recommends: python3, rampler Section: science Priority: optional Homepage: https://github.com/lbcb-sci/racon Description: consensus module for raw de novo DNA assembly of long uncorrected reads Racon is intended as a standalone consensus module to correct raw contigs generated by rapid assembly methods which do not include a consensus step. The goal of Racon is to generate genomic consensus which is of similar or better quality compared to the output generated by assembly methods which employ both error correction and consensus steps, while providing a speedup of several times compared to those methods. It supports data produced by both Pacific Biosciences and Oxford Nanopore Technologies. . Racon can be used as a polishing tool after the assembly with either Illumina data or data produced by third generation of sequencing. The type of data inputed is automatically detected. . Racon takes as input only three files: contigs in FASTA/FASTQ format, reads in FASTA/FASTQ format and overlaps/alignments between the reads and the contigs in MHAP/PAF/SAM format. Output is a set of polished contigs in FASTA format printed to stdout. All input files can be compressed with gzip. . Racon can also be used as a read error-correction tool. In this scenario, the MHAP/PAF/SAM file needs to contain pairwise overlaps between reads including dual overlaps. . A wrapper script is also available to enable easier usage to the end- user for large datasets. It has the same interface as racon but adds two additional features from the outside. Sequences can be subsampled to decrease the total execution time (accuracy might be lower) while target sequences can be split into smaller chunks and run sequentially to decrease memory consumption. Both features can be run at the same time as well. drwxr-xr-x root/root 0 2021-12-31 11:38 ./ drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/ drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/bin/ -rwxr-xr-x root/root 150272 2021-12-31 11:38 ./usr/bin/racon -rwxr-xr-x root/root 10415 2021-12-31 11:38 ./usr/bin/racon_wrapper.py drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/share/ drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/share/doc/racon/ -rw-r--r-- root/root 278 2021-12-31 11:36 ./usr/share/doc/racon/README.test -rw-r--r-- root/root 1199 2021-12-31 11:38 ./usr/share/doc/racon/changelog.Debian.gz -rw-r--r-- root/root 1647 2021-12-31 11:31 ./usr/share/doc/racon/copyright drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/share/doc/racon/examples/ drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/share/doc/racon/examples/data/ -rw-r--r-- root/root 146882 2021-12-31 11:38 ./usr/share/doc/racon/examples/data/sample_ava_overlaps.mhap.gz -rw-r--r-- root/root 151632 2021-12-31 11:38 ./usr/share/doc/racon/examples/data/sample_ava_overlaps.paf.gz -rw-r--r-- root/root 14197 2021-12-31 11:38 ./usr/share/doc/racon/examples/data/sample_layout.fasta.gz -rw-r--r-- root/root 5111 2021-12-31 11:38 ./usr/share/doc/racon/examples/data/sample_overlaps.paf.gz -rw-r--r-- root/root 698977 2021-12-31 11:38 ./usr/share/doc/racon/examples/data/sample_overlaps.sam.gz -rw-r--r-- root/root 488701 2021-12-31 11:38 ./usr/share/doc/racon/examples/data/sample_reads.fasta.gz -rw-r--r-- root/root 1526281 2021-12-31 11:38 ./usr/share/doc/racon/examples/data/sample_reads.fastq.gz -rw-r--r-- root/root 15195 2021-12-31 11:38 ./usr/share/doc/racon/examples/data/sample_reference.fasta.gz -rw-r--r-- root/root 566 2021-12-31 11:35 ./usr/share/doc/racon/run-unit-test drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 114 2021-12-19 16:38 ./usr/share/lintian/overrides/racon drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/share/man/ drwxr-xr-x root/root 0 2021-12-31 11:38 ./usr/share/man/man1/ -rw-r--r-- root/root 1472 2021-12-31 11:38 ./usr/share/man/man1/racon.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 52716 Build-Time: 356 Distribution: kinetic Host Architecture: amd64 Install-Time: 33 Job: racon_1.5.0-2.dsc Machine Architecture: amd64 Package: racon Package-Time: 393 Source-Version: 1.5.0-2 Space: 52716 Status: successful Version: 1.5.0-2 -------------------------------------------------------------------------------- Finished at 2022-06-23T13:55:52Z Build needed 00:06:33, 52716k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24062269 Scanning for processes to kill in build PACKAGEBUILD-24062269