https://launchpad.net/ubuntu/+archive/test-rebuild-20220617-kinetic/+build/24052601 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-019 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 23 Jun 09:53:56 ntpdate[1839]: adjust time server 10.211.37.1 offset -0.008563 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24052601 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24052601 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24052601 Starting target for build PACKAGEBUILD-24052601 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24052601 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24052601 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24052601 Adding trusted keys to build-PACKAGEBUILD-24052601 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24052601 Updating target for build PACKAGEBUILD-24052601 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic InRelease [23.8 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 Packages [9632 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main Translation-en [4132 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5729 kB] Fetched 22.2 MB in 3s (7422 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 83 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 79.7 MB of archives. After this operation, 5304 kB of additional disk space will be used. Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libatomic1 amd64 12.1.0-2ubuntu1 [10.4 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libubsan1 amd64 12.1.0-2ubuntu1 [969 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libquadmath0 amd64 12.1.0-2ubuntu1 [152 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblsan0 amd64 12.1.0-2ubuntu1 [1060 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 libitm1 amd64 12.1.0-2ubuntu1 [29.5 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgomp1 amd64 12.1.0-2ubuntu1 [125 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-12-base amd64 12.1.0-2ubuntu1 [18.8 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-s1 amd64 12.1.0-2ubuntu1 [54.2 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcc1-0 amd64 12.1.0-2ubuntu1 [46.6 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++6 amd64 12.1.0-2ubuntu1 [679 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:23 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:32 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:33 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:38 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.7.9-4 [12.1 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24052601 amd64 kinetic -c chroot:build-PACKAGEBUILD-24052601 --arch=amd64 --dist=kinetic --nolog -A psortb_3.0.6+dfsg-3.dsc Initiating build PACKAGEBUILD-24052601 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lgw01-amd64-019.buildd +==============================================================================+ | psortb 3.0.6+dfsg-3 (amd64) Thu, 23 Jun 2022 09:54:16 +0000 | +==============================================================================+ Package: psortb Version: 3.0.6+dfsg-3 Source Version: 3.0.6+dfsg-3 Distribution: kinetic Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24052601/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/psortb-ziPj9P/resolver-eBlYXH' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- psortb_3.0.6+dfsg-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/psortb-ziPj9P/psortb-3.0.6+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/psortb-ziPj9P' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libsvm-dev, bioperl, ncbi-blast+-legacy, libsquid-dev, libhmmer2-dev, libsvmloc-dev, libmodhmm-dev, pkg-config, pftools, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libsvm-dev, bioperl, ncbi-blast+-legacy, libsquid-dev, libhmmer2-dev, libsvmloc-dev, libmodhmm-dev, pkg-config, pftools, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [433 B] Get:5 copy:/<>/apt_archive ./ Packages [513 B] Fetched 1903 B in 0s (157 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libdw1 libelf1 libexception-class-perl libexpat1 libfile-slurp-perl libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhmmer2-dev libicu71 libio-string-perl liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmodhmm-dev libmodhmm0 libmpdec3 libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libsigsegv2 libsquid-dev libsquid1 libsub-override-perl libsub-uplevel-perl libsvm-dev libsvm3 libsvmloc-dev libsvmloc0 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtool libuchardet0 libxml2 m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data pftools pkg-config po-debconf python3 python3-minimal python3.10 python3.10-minimal Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libxml-sax-expatxs-perl biosquid libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support Recommended packages: bioperl-run perl-doc libhttp-message-perl libwww-perl libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl liburi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libdw1 libelf1 libexception-class-perl libexpat1 libfile-slurp-perl libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhmmer2-dev libicu71 libio-string-perl liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmodhmm-dev libmodhmm0 libmpdec3 libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libsigsegv2 libsquid-dev libsquid1 libsub-override-perl libsub-uplevel-perl libsvm-dev libsvm3 libsvmloc-dev libsvmloc0 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtool libuchardet0 libxml2 m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data pftools pkg-config po-debconf python3 python3-minimal python3.10 python3.10-minimal sbuild-build-depends-main-dummy 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 71.6 MB of archives. After this operation, 235 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [734 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpython3.10-minimal amd64 3.10.5-1 [804 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 libexpat1 amd64 2.4.8-1 [90.6 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3.10-minimal amd64 3.10.5-1 [2228 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-minimal amd64 3.10.4-0ubuntu2 [24.4 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 media-types all 8.0.0 [24.9 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmpdec3 amd64 2.5.1-2build2 [86.8 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpython3.10-stdlib amd64 3.10.5-1 [1805 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3.10 amd64 3.10.5-1 [491 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpython3-stdlib amd64 3.10.4-0ubuntu2 [6990 B] Get:11 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amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 groff-base amd64 1.22.4-8build1 [955 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblmdb0 amd64 0.9.24-1build2 [47.6 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpipeline1 amd64 1.5.6-1 [23.1 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 man-db amd64 2.10.2-1 [1187 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsigsegv2 amd64 2.13-1ubuntu3 [14.6 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 m4 amd64 1.4.18-5ubuntu2 [199 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 autoconf all 2.71-2 [338 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 autopoint all 0.21-6 [421 kB] 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kinetic/universe amd64 libsquid-dev amd64 1.9g+cvs20050121-12 [143 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libsvm3 amd64 3.24+ds-6 [41.6 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libsvm-dev amd64 3.24+ds-6 [50.5 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libsvmloc0 amd64 1.0+dfsg-5 [13.5 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libsvmloc-dev amd64 1.0+dfsg-5 [12.3 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/universe amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3519 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/universe amd64 ncbi-blast+ amd64 2.12.0+ds-3build1 [12.3 MB] Get:78 http://ftpmaster.internal/ubuntu kinetic/universe amd64 ncbi-blast+-legacy all 2.12.0+ds-3build1 [4948 B] Get:79 http://ftpmaster.internal/ubuntu kinetic/universe amd64 pftools amd64 3.2.12-1 [24.8 MB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 pkg-config amd64 0.29.2-1ubuntu3 [48.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 71.6 MB in 5s (13.7 MB/s) Selecting previously unselected package libpython3.10-minimal:amd64. 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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (8.0.0) ... Setting up libpipeline1:amd64 (1.5.6-1) ... Setting up liblmdb0:amd64 (0.9.24-1build2) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libicu71:amd64 (71.1-3) ... Setting up libfile-slurp-perl (9999.32-1) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libtest-deep-perl (1.130-1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.72.2-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.7.1ubuntu1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up gettext-base (0.21-6) ... Setting up file (1:5.41-4) ... Setting up libmodhmm0:amd64 (1.0+dfsg-5) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libmbedcrypto7:amd64 (2.28.0-2) ... Setting up libtext-diff-perl (1.45-1) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu3) ... Setting up autopoint (0.21-6) ... Setting up pkg-config (0.29.2-1ubuntu3) ... Setting up libgfortran5:amd64 (12.1.0-2ubuntu1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libsquid1 (1.9g+cvs20050121-12) ... Setting up libdata-stag-perl (0.14-3) ... Setting up pftools (3.2.12-1) ... Setting up libuchardet0:amd64 (0.0.7-1build2) ... Setting up libmpdec3:amd64 (2.5.1-2build2) ... Setting up libsub-uplevel-perl (0.2800-2) ... Setting up libsub-override-perl (0.09-3) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libhmmer2-dev (2.3.2+dfsg-7) ... Setting up libmodhmm-dev:amd64 (1.0+dfsg-5) ... Setting up libelf1:amd64 (0.187-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1) ... Setting up libsvm3:amd64 (3.24+ds-6) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:amd64 (0.187-1) ... Setting up gettext (0.21-6) ... Setting up libmbedx509-1:amd64 (2.28.0-2) ... Setting up libmbedtls14:amd64 (2.28.0-2) ... Setting up libtool (2.4.7-4) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libtest-differences-perl (0.69-1) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libsquid-dev (1.9g+cvs20050121-12) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:amd64 (3.10.5-1) ... Setting up libtest-exception-perl (0.43-2) ... Setting up libsvmloc0:amd64 (1.0+dfsg-5) ... Setting up libsvm-dev:amd64 (3.24+ds-6) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libpython3-stdlib:amd64 (3.10.4-0ubuntu2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.10 (3.10.5-1) ... Setting up libsvmloc-dev:amd64 (1.0+dfsg-5) ... Setting up libtest-most-perl (0.37-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.10.4-0ubuntu2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up ncbi-blast+ (2.12.0+ds-3build1) ... Setting up dh-autoreconf (20) ... Setting up bioperl (1.7.8-1) ... Setting up ncbi-blast+-legacy (2.12.0+ds-3build1) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-27.28 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38.50.20220615-4ubuntu1 binutils-common_2.38.50.20220615-4ubuntu1 binutils-x86-64-linux-gnu_2.38.50.20220615-4ubuntu1 bioperl_1.7.8-1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-3ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3build1 debconf_1.5.79ubuntu1 debhelper_13.7.1ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-4build1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.8ubuntu1 dpkg-dev_1.21.8ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-3ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-3ubuntu1 gcc-11-base_11.3.0-3ubuntu1 gcc-12-base_12.1.0-2ubuntu1 gettext_0.21-6 gettext-base_0.21-6 gpg_2.2.27-3ubuntu2 gpg-agent_2.2.27-3ubuntu2 gpgconf_2.2.27-3ubuntu2 gpgv_2.2.27-3ubuntu2 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hostname_3.23ubuntu2 init_1.63 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libalgorithm-diff-perl_1.201-1 libapparmor1_3.0.4-2ubuntu3 libapt-pkg6.0_2.5.0 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-3ubuntu1 libassuan0_2.5.5-3 libatomic1_12.1.0-2ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libbinutils_2.38.50.20220615-4ubuntu1 libbio-perl-perl_1.7.8-1 libblkid1_2.38-4ubuntu1 libbz2-1.0_1.0.8-5build1 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcap-ng0_0.7.9-4 libcap2_1:2.44-1build3 libcapture-tiny-perl_0.48-1 libcc1-0_12.1.0-2ubuntu1 libclass-data-inheritable-perl_0.08-3 libcom-err2_1.46.5-2ubuntu2 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38.50.20220615-4ubuntu1 libctf0_2.38.50.20220615-4ubuntu1 libdata-stag-perl_0.14-3 libdb5.3_5.3.28+dfsg1-0.9 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.7.1ubuntu1 libdevel-stacktrace-perl_2.0400-1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.8ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libexception-class-perl_1.45-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libffi8_3.4.2-4 libfile-slurp-perl_9999.32-1 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.3.0-3ubuntu1 libgcc-s1_12.1.0-2ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12.1.0-2ubuntu1 libglib2.0-0_2.72.2-2 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.6-2ubuntu1 libgomp1_12.1.0-2ubuntu1 libgpg-error0_1.45-2 libgprofng0_2.38.50.20220615-4ubuntu1 libgssapi-krb5-2_1.19.2-2 libhmmer2-dev_2.3.2+dfsg-7 libhogweed6_3.7.3-1build2 libicu71_71.1-3 libidn2-0_2.3.2-2build1 libio-string-perl_1.08-3.1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.24-2build1 libitm1_12.1.0-2ubuntu1 libjson-c5_0.16-1 libk5crypto3_1.19.2-2 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libudev1_249.11-0ubuntu4 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.15.0-27.28 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_27 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38-4ubuntu1 ncbi-blast+_2.12.0+ds-3build1 ncbi-blast+-legacy_2.12.0+ds-3build1 ncbi-data_6.1.20170106+dfsg1-9 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.3-5ubuntu3 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-3ubuntu1 perl-base_5.34.0-3ubuntu1 perl-modules-5.34_5.34.0-3ubuntu1 pftools_3.2.12-1 pinentry-curses_1.2.0-1ubuntu1 pkg-config_0.29.2-1ubuntu3 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-6ubuntu2 python3_3.10.4-0ubuntu2 python3-minimal_3.10.4-0ubuntu2 python3.10_3.10.5-1 python3.10-minimal_3.10.5-1 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_249.11-0ubuntu4 systemd-sysv_249.11-0ubuntu4 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: psortb Binary: psortb Architecture: any Version: 3.0.6+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.psort.org/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/psortb Vcs-Git: https://salsa.debian.org/med-team/psortb.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libsvm-dev, bioperl, ncbi-blast+-legacy, libsquid-dev, libhmmer2-dev, libsvmloc-dev, libmodhmm-dev, pkg-config, pftools Package-List: psortb deb science optional arch=any Checksums-Sha1: c47d0ec328df75f2151dd6d5b5840768006519f8 17036876 psortb_3.0.6+dfsg.orig.tar.xz 3ff44e2646ae0b528bd81be76dee033d507bd6b2 6976 psortb_3.0.6+dfsg-3.debian.tar.xz Checksums-Sha256: ed32aa0240bb03daed228b32614a53c146afba6ca66fd087702315d75e23f751 17036876 psortb_3.0.6+dfsg.orig.tar.xz f844813967c3b4bab7d979cf10a21c23428f28f6484859c0def1c7cc40fcc896 6976 psortb_3.0.6+dfsg-3.debian.tar.xz Files: c4feab06d3031fecac1ab90258550209 17036876 psortb_3.0.6+dfsg.orig.tar.xz 9594c13a92511a5179fa3159c56c810a 6976 psortb_3.0.6+dfsg-3.debian.tar.xz Dgit: a9febf79c415bb81a3b745d1eb0c1b28da1388a4 debian archive/debian/3.0.6+dfsg-3 https://git.dgit.debian.org/psortb -----BEGIN PGP SIGNATURE----- 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signature: No public key dpkg-source: warning: cannot verify signature ./psortb_3.0.6+dfsg-3.dsc dpkg-source: info: extracting psortb in /<> dpkg-source: info: unpacking psortb_3.0.6+dfsg.orig.tar.xz dpkg-source: info: unpacking psortb_3.0.6+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying biosquid_includes.patch dpkg-source: info: applying fix_hmmer_interface.patch dpkg-source: info: applying fix_build_Algorithm-SVM.patch dpkg-source: info: applying remove-bundled-party-libsvm.patch dpkg-source: info: applying path_to_conf.patch dpkg-source: info: applying fix_module_path.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24052601 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24052601 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24052601 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package psortb dpkg-buildpackage: info: source version 3.0.6+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean if [ -x psort/bin/psort.debsave ] ; then \ mv psort/bin/psort.debsave psort/bin/psort ; \ fi make[1]: Leaving directory '/<>' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' cp -a psort/bin/psort psort/bin/psort.debsave dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now" External Module XML::RPC, XML Based RPC client, is not installed on this computer. The XML::RPC in PSortb needs it for making calls to remote PSortb servers, if you don't plan to do this, ignore this warning We think we've found blastall, please enter the path if this isn't correct [/usr/bin/] /usr/bin/ We think we've found pfscan, please enter the path if this isn't correct [/usr/bin/] /usr/bin/ Where do you plan to install the psort configuration files? [/usr/local/psortb] /usr/local/psortb Checking if your kit is complete... Looks good hmmer was not found in the dynamic linker path, is there somewhere else we should check? [/usr/local/lib64] /usr/local/lib64 We're still not finding hmmer either in your dynamic linker path (/etc/ld.so.conf) or in /usr/local/lib64. Do you want to continue anyways? [Y/n] [Y] Y squid was not found in the dynamic linker path, is there somewhere else we should check? [/usr/local/lib64] /usr/local/lib64 We're still not finding squid either in your dynamic linker path (/etc/ld.so.conf) or in /usr/local/lib64. Do you want to continue anyways? [Y/n] [Y] Y Checking if your kit is complete... Looks good Writing MYMETA.yml and MYMETA.json svmloc was not found in the dynamic linker path, is there somewhere else we should check? [/usr/local/lib64] /usr/local/lib64 We're still not finding svmloc either in your dynamic linker path (/etc/ld.so.conf) or in /usr/local/lib64. Do you want to continue anyways? [Y/n] [Y] Y Checking if your kit is complete... Looks good Writing MYMETA.yml and MYMETA.json modhmm was not found in the dynamic linker path, is there somewhere else we should check? [/usr/local/lib64] /usr/local/lib64 We're still not finding modhmm either in your dynamic linker path (/etc/ld.so.conf) or in /usr/local/lib64. Do you want to continue anyways? [Y/n] [Y] Y Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for Bio::Tools::PSort Writing MYMETA.yml and MYMETA.json Updating psort/bin/psort with path hints Making sclblast databases Building a new DB, current time: 06/23/2022 09:54:34 New DB name: /<>/psort/conf/analysis/sclblast/gramneg/sclblast New DB title: sclblast Sequence type: Protein Keep MBits: T Maximum file size: 1000000000B Error: NCBI C++ Exception: T0 "c++/include/corelib/ncbidiag.hpp", line 2490: Error: (CSeqIdException::eFormat) ncbi::objects::CSeq_id::Set() - Malformatted ID 15596049[Extracellular] Program failed, try executing the command manually. Building a new DB, current time: 06/23/2022 09:54:34 New DB name: /<>/psort/conf/analysis/sclblast/grampos/sclblast New DB title: sclblast Sequence type: Protein Keep MBits: T Maximum file size: 1000000000B BLAST Database creation error: Error: Duplicate seq_ids are found: LCL|145559529 Program failed, try executing the command manually. Building a new DB, current time: 06/23/2022 09:54:35 New DB name: /<>/psort/conf/analysis/sclblast/archaea/sclblast New DB title: sclblast Sequence type: Protein Keep MBits: T Maximum file size: 1000000000B FASTA-Reader: Ignoring invalid residues at position(s): On line 46049: 38 FASTA-Reader: Ignoring invalid residues at position(s): On line 87237: 23 FASTA-Reader: Title ends with at least 50 valid amino acid characters. Was the sequence accidentally put in the title line? FASTA-Reader: Ignoring invalid residues at position(s): On line 87252: 4 FASTA-Reader: Ignoring invalid residues at position(s): On line 87263: 8 BLAST Database creation error: Error: Duplicate seq_ids are found: LCL|15596641 Program failed, try executing the command manually. Ready for make, next steps you must run: $ make $ make test $ make install RECOMMENDED: cp -r psort /usr/local/psortb PSortb will then be available at /usr/local/psortb/bin/psort or in your path depending on your configuration make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # hack around the issue that configure injects wrong root dir /usr/local/psortb mv psort/bin/psort.debsave psort/bin/psort dh_auto_build make -j4 make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/algorithm-hmm' Running Mkbootstrap for HMM () "/usr/bin/perl" "/usr/share/perl/5.34.0/ExtUtils/xsubpp" -C++ -typemap '/usr/share/perl/5.34/ExtUtils/typemap' -typemap '/<>/algorithm-hmm/typemap' HMM.xs > HMM.xsc cp lib/Bio/Tools/PSort/Module/HMMTOP.pm blib/lib/Bio/Tools/PSort/Module/HMMTOP.pm cp lib/Bio/Tools/PSort/Report/Formatter/long.pm blib/lib/Bio/Tools/PSort/Report/Formatter/long.pm cp lib/Bio/Tools/PSort/Module/SCLBlast.pm blib/lib/Bio/Tools/PSort/Module/SCLBlast.pm cp lib/Bio/Tools/PSort/Report.pm blib/lib/Bio/Tools/PSort/Report.pm cp lib/Bio/Tools/PSort/Install.pm blib/lib/Bio/Tools/PSort/Install.pm cp lib/Bio/Tools/PSort/Module/OMPMotif.pm blib/lib/Bio/Tools/PSort/Module/OMPMotif.pm cp lib/Bio/Tools/PSort/Module/SVMLoc.pm blib/lib/Bio/Tools/PSort/Module/SVMLoc.pm cp lib/Bio/Tools/PSort/Module/InputI.pm blib/lib/Bio/Tools/PSort/Module/InputI.pm cp lib/Bio/Tools/PSort/ModuleI.pm blib/lib/Bio/Tools/PSort/ModuleI.pm cp lib/Bio/Tools/Motif/Pattern.pm blib/lib/Bio/Tools/Motif/Pattern.pm cp lib/Bio/Tools/PSort/Module/Rules.pm blib/lib/Bio/Tools/PSort/Module/Rules.pm cp lib/Bio/Tools/Motif/Match.pm blib/lib/Bio/Tools/Motif/Match.pm cp lib/Bio/Tools/PSort/Profile.pm blib/lib/Bio/Tools/PSort/Profile.pm cp lib/Bio/Tools/PSort/Module/AnalysisI.pm blib/lib/Bio/Tools/PSort/Module/AnalysisI.pm cp lib/Bio/Tools/PSort/Module/Profile.pm blib/lib/Bio/Tools/PSort/Module/Profile.pm cp lib/Bio/Tools/PSort/Module/OutputI.pm blib/lib/Bio/Tools/PSort/Module/OutputI.pm cp lib/Bio/Tools/PSort/Module/ModHMM.pm blib/lib/Bio/Tools/PSort/Module/ModHMM.pm cp lib/Bio/Tools/PSort/Module/Signal.pm blib/lib/Bio/Tools/PSort/Module/Signal.pm cp lib/Bio/Tools/PSort/Report/Result.pm blib/lib/Bio/Tools/PSort/Report/Result.pm cp lib/Bio/Tools/PSort/Report/Formatter/normal.pm blib/lib/Bio/Tools/PSort/Report/Formatter/normal.pm cp lib/Bio/Tools/PSort/Report/Formatter.pm blib/lib/Bio/Tools/PSort/Report/Formatter.pm cp lib/Bio/Tools/PSort/Report/Formatter/terse.pm blib/lib/Bio/Tools/PSort/Report/Formatter/terse.pm cp lib/Bio/Tools/PSort/Module/SVMLocApache.pm blib/lib/Bio/Tools/PSort/Module/SVMLocApache.pm cp lib/Bio/Tools/PSort/Pathway.pm blib/lib/Bio/Tools/PSort/Pathway.pm cp lib/Bio/Tools/PSort/Module/Null.pm blib/lib/Bio/Tools/PSort/Module/Null.pm cp lib/Bio/Tools/PSort/Module/Motif.pm blib/lib/Bio/Tools/PSort/Module/Motif.pm cp lib/Bio/Tools/PSort/Module/Bayesian.pm blib/lib/Bio/Tools/PSort/Module/Bayesian.pm cp lib/Bio/Tools/PSort/Profile/Match.pm blib/lib/Bio/Tools/PSort/Profile/Match.pm cp lib/Bio/Tools/Motif.pm blib/lib/Bio/Tools/Motif.pm cp lib/Bio/Tools/PSort/Report/Formatter/html.pm blib/lib/Bio/Tools/PSort/Report/Formatter/html.pm cp lib/Bio/Tools/PSort/Constants.pm blib/lib/Bio/Tools/PSort/Constants.pm cp lib/Bio/Tools/PSort.pm blib/lib/Bio/Tools/PSort.pm chmod 644 "HMM.bs" g++ -c -Isrc/include `pkg-config --cflags libsquid` `pkg-config --cflags libhmmer2` -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.02\" -DXS_VERSION=\"0.02\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.34/CORE" hmm-binding.cpp cp lib/Algorithm/HMM/Hit/Domain.pm ../blib/lib/Algorithm/HMM/Hit/Domain.pm cp lib/Algorithm/HMM/Hit/Global.pm ../blib/lib/Algorithm/HMM/Hit/Global.pm cp lib/Algorithm/HMM/Report.pm ../blib/lib/Algorithm/HMM/Report.pm cp lib/Algorithm/HMM/Hit.pm ../blib/lib/Algorithm/HMM/Hit.pm cp lib/Algorithm/HMM.pm ../blib/lib/Algorithm/HMM.pm AutoSplitting ../blib/lib/Algorithm/HMM.pm (../blib/lib/auto/Algorithm/HMM) "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HMM.bs ../blib/arch/auto/Algorithm/HMM/HMM.bs 644 cp lib/Bio/Tools/PSort/XMLRPC/Client.pm blib/lib/Bio/Tools/PSort/XMLRPC/Client.pm cp lib/Bio/Tools/Run/HMMTOP/Helix.pm blib/lib/Bio/Tools/Run/HMMTOP/Helix.pm cp lib/Bio/Tools/SVMLoc.pm blib/lib/Bio/Tools/SVMLoc.pm cp lib/Bio/Tools/Run/SCLBlastLocal.pm blib/lib/Bio/Tools/Run/SCLBlastLocal.pm cp lib/Bio/Tools/Signal.pm blib/lib/Bio/Tools/Signal.pm cp lib/Bio/Tools/Signal/Report.pm blib/lib/Bio/Tools/Signal/Report.pm cp lib/Bio/Tools/Run/SCLBlast/Report.pm blib/lib/Bio/Tools/Run/SCLBlast/Report.pm cp lib/Bio/Tools/Run/SCLBlast/Hit.pm blib/lib/Bio/Tools/Run/SCLBlast/Hit.pm cp lib/Bio/Tools/Run/SCLBlast.pm blib/lib/Bio/Tools/Run/SCLBlast.pm cp lib/Bio/Tools/Run/HMMTOP.pm blib/lib/Bio/Tools/Run/HMMTOP.pm cp lib/Bio/Tools/Run/HMMTOP/Report.pm blib/lib/Bio/Tools/Run/HMMTOP/Report.pm Please specify prototyping behavior for HMM.xs (see perlxs manual) mv HMM.xsc HMM.c g++ -c -Isrc/include `pkg-config --cflags libsquid` `pkg-config --cflags libhmmer2` -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.02\" -DXS_VERSION=\"0.02\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.34/CORE" HMM.c hmm-binding.cpp: In member function ‘HMMReport* HMM::search(char*)’: hmm-binding.cpp:136:71: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 136 | PostprocessSignificantHit(ghit, dhit, trace, model, dseq, seqlen, "SEQ", | ^~~~~ rm -f ../blib/arch/auto/Algorithm/HMM/HMM.so x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong HMM.o hmm-binding.o -o ../blib/arch/auto/Algorithm/HMM/HMM.so \ -lm -lpthread -lstdc++ -lhmmer -lsquid \ chmod 755 ../blib/arch/auto/Algorithm/HMM/HMM.so Manifying 5 pod documents make[3]: Leaving directory '/<>/algorithm-hmm' make[3]: Entering directory '/<>/bio-tools-psort-svmloc' Running Mkbootstrap for SVMLoc () "/usr/bin/perl" "/usr/share/perl/5.34.0/ExtUtils/xsubpp" -C++ -typemap '/usr/share/perl/5.34/ExtUtils/typemap' -typemap '/<>/bio-tools-psort-svmloc/typemap' SVMLoc.xs > SVMLoc.xsc chmod 644 "SVMLoc.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SVMLoc.bs ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.bs 644 cp lib/Bio/Tools/PSort/SVMLoc/DataSet.pm ../blib/lib/Bio/Tools/PSort/SVMLoc/DataSet.pm cp lib/Bio/Tools/PSort/SVMLoc.pm ../blib/lib/Bio/Tools/PSort/SVMLoc.pm AutoSplitting ../blib/lib/Bio/Tools/PSort/SVMLoc.pm (../blib/lib/auto/Bio/Tools/PSort/SVMLoc) Please specify prototyping behavior for SVMLoc.xs (see perlxs manual) mv SVMLoc.xsc SVMLoc.c g++ -c -Wall -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.01\" -DXS_VERSION=\"0.01\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.34/CORE" SVMLoc.c rm -f ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong SVMLoc.o -o ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so \ -lsvmloc -lm -lsvm -lstdc++ \ chmod 755 ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so Manifying 2 pod documents make[3]: Leaving directory '/<>/bio-tools-psort-svmloc' make[3]: Entering directory '/<>/bio-tools-psort-modhmm' Running Mkbootstrap for ModHMM () chmod 644 "ModHMM.bs" "/usr/bin/perl" "/usr/share/perl/5.34.0/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.34/ExtUtils/typemap' -typemap '/<>/bio-tools-psort-modhmm/typemap' modhmm.xs > modhmm.xsc cc -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.01\" -DXS_VERSION=\"0.01\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.34/CORE" binding.c "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- ModHMM.bs ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.bs 644 binding.c: In function ‘helix_DESTROY’: binding.c:52:13: warning: implicit declaration of function ‘free’ [-Wimplicit-function-declaration] 52 | free(hSites->helix); | ^~~~ binding.c:4:1: note: include ‘’ or provide a declaration of ‘free’ 3 | #include "modhmm0.92b/structs.h" +++ |+#include 4 | binding.c:52:13: warning: incompatible implicit declaration of built-in function ‘free’ [-Wbuiltin-declaration-mismatch] 52 | free(hSites->helix); | ^~~~ binding.c:52:13: note: include ‘’ or provide a declaration of ‘free’ binding.c:55:9: warning: incompatible implicit declaration of built-in function ‘free’ [-Wbuiltin-declaration-mismatch] 55 | free(hSites); | ^~~~ binding.c:55:9: note: include ‘’ or provide a declaration of ‘free’ cp lib/Bio/Tools/PSort/ModHMM.pm ../blib/lib/Bio/Tools/PSort/ModHMM.pm AutoSplitting ../blib/lib/Bio/Tools/PSort/ModHMM.pm (../blib/lib/auto/Bio/Tools/PSort/ModHMM) mv modhmm.xsc modhmm.c cc -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.01\" -DXS_VERSION=\"0.01\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.34/CORE" modhmm.c modhmm.c: In function ‘XS_Bio__Tools__PSort__ModHMM_find_helices’: modhmm.c:179:18: warning: implicit declaration of function ‘find_helices’; did you mean ‘get_helices’? [-Wimplicit-function-declaration] 179 | RETVAL = find_helices(seq, hmmfile, repfile, path); | ^~~~~~~~~~~~ | get_helices rm -f ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.so x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong modhmm.o binding.o -o ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.so \ -lm -lstdc++ -lmodhmm \ chmod 755 ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.so Manifying 1 pod document make[3]: Leaving directory '/<>/bio-tools-psort-modhmm' Manifying 18 pod documents make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j4 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/algorithm-hmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HMM.bs ../blib/arch/auto/Algorithm/HMM/HMM.bs 644 Manifying 5 pod documents make[2]: Leaving directory '/<>/algorithm-hmm' make[2]: Entering directory '/<>/bio-tools-psort-svmloc' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SVMLoc.bs ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.bs 644 Manifying 2 pod documents make[2]: Leaving directory '/<>/bio-tools-psort-svmloc' make[2]: Entering directory '/<>/bio-tools-psort-modhmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- ModHMM.bs ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.bs 644 Manifying 1 pod document make[2]: Leaving directory '/<>/bio-tools-psort-modhmm' make[2]: Entering directory '/<>/algorithm-hmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HMM.bs ../blib/arch/auto/Algorithm/HMM/HMM.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/hmm.t .. 1..5 ok 1 - use Algorithm::HMM; ok 2 Creating new Algorithm::HMM ok 3 - Ensuring we could load a model Saving model... ok 4 - Testing saving a model Loading saved model... ok 5 - Testing reloading a model ok All tests successful. Files=1, Tests=5, 0 wallclock secs ( 0.01 usr 0.00 sys + 0.04 cusr 0.01 csys = 0.06 CPU) Result: PASS make[2]: Leaving directory '/<>/algorithm-hmm' make[2]: Entering directory '/<>/bio-tools-psort-svmloc' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SVMLoc.bs ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/svmloc.t .. 1..15 ok 1 - use Bio::Tools::PSort::SVMLoc; ok 2 - use Bio::Tools::PSort::SVMLoc::DataSet; ok 3 - Loaded SVMLoc Creating new Bio::Tools::PSort::SVMLoc ok 4 - Creating SVMLoc object Checking predictions on loaded model ok 5 - Classify seq 1 ok 6 - Classify seq 2 ok 7 - Classify seq 3 Creating second Bio::Tools::PSort::SVMLoc ok 8 - Creating SVMLoc object 2 Creating new Bio::Tools::PSort::SVMLoc::DataSet objects ok 9 - Dataset 1 created ok 10 - Dataset 2 created ok 11 - Dataset 3 created Adding attributes to Bio::Tools::PSort::SVMLoc::DataSet objects ok 12 Checking predictions on second loaded model ok 13 - Classify seq 1 on model 2 ok 14 - Classify seq 2 on model 2 ok 15 - Classify seq 3 on model 2 Everything looks ok! ok All tests successful. Files=1, Tests=15, 0 wallclock secs ( 0.02 usr 0.01 sys + 0.21 cusr 0.02 csys = 0.26 CPU) Result: PASS make[2]: Leaving directory '/<>/bio-tools-psort-svmloc' make[2]: Entering directory '/<>/bio-tools-psort-modhmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- ModHMM.bs ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/modhmm.t .. 1..4 ok 1 - use Bio::Tools::PSort::ModHMM; ok 2 - Loading ModHMM Running sequence through Bio::Tools::PSort::ModHMM ok 3 - Running sequence through ModHMM Retreiving TM helix sites ok 4 - Retreiving TM helix sites ok All tests successful. Files=1, Tests=4, 0 wallclock secs ( 0.01 usr 0.01 sys + 0.14 cusr 0.00 csys = 0.16 CPU) Result: PASS make[2]: Leaving directory '/<>/bio-tools-psort-modhmm' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/psort.t .. 1..2 ok 1 - PSort module loaded Creating new Bio::Tools::PSort ok 2 - PSort object made ok All tests successful. Files=1, Tests=2, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.08 cusr 0.00 csys = 0.10 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/psortb/ make -j4 install DESTDIR=/<>/psortb-3.0.6\+dfsg/debian/psortb AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/algorithm-hmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HMM.bs ../blib/arch/auto/Algorithm/HMM/HMM.bs 644 Manifying 5 pod documents make[2]: Leaving directory '/<>/algorithm-hmm' make[2]: Entering directory '/<>/bio-tools-psort-svmloc' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SVMLoc.bs ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.bs 644 Manifying 2 pod documents make[2]: Leaving directory '/<>/bio-tools-psort-svmloc' make[2]: Entering directory '/<>/bio-tools-psort-modhmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- ModHMM.bs ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.bs 644 Manifying 1 pod document make[2]: Leaving directory '/<>/bio-tools-psort-modhmm' Manifying 18 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Algorithm/HMM/HMM.so Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/ModHMM/ModHMM.so Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM/Hit.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM/Report.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM/Hit/Domain.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Algorithm/HMM/Hit/Global.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Motif.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Signal.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/SVMLoc.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/SCLBlast.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/HMMTOP.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/SCLBlastLocal.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/HMMTOP/Report.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/HMMTOP/Helix.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/SCLBlast/Hit.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Run/SCLBlast/Report.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Signal/Report.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Profile.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Pathway.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/ModHMM.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Install.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Constants.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/SVMLoc.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/ModuleI.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/XMLRPC/Client.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Profile/Match.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Result.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter/long.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter/html.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter/terse.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Report/Formatter/normal.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/SVMLoc/DataSet.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/AnalysisI.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/SCLBlast.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Null.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Motif.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/InputI.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Rules.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Profile.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/OutputI.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/ModHMM.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/OMPMotif.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/HMMTOP.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/SVMLocApache.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Signal.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/Bayesian.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/PSort/Module/SVMLoc.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Motif/Pattern.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/Bio/Tools/Motif/Match.pm Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Algorithm/HMM/autosplit.ix Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/SVMLoc/autosplit.ix Installing /<>/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/ModHMM/autosplit.ix Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::ModHMM.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::OMPMotif.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::Motif.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Profile.3pm Installing /<>/debian/psortb/usr/share/man/man3/Algorithm::HMM::Hit::Domain.3pm Installing /<>/debian/psortb/usr/share/man/man3/Algorithm::HMM::Hit.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::ModuleI.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Pathway.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::OutputI.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::Null.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Profile::Match.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::SVMLoc::DataSet.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::InputI.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::Signal.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::Run::HMMTOP.3pm Installing /<>/debian/psortb/usr/share/man/man3/Algorithm::HMM::Report.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::Motif::Match.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::SVMLoc.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::Motif::Pattern.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::SVMLoc.3pm Installing /<>/debian/psortb/usr/share/man/man3/Algorithm::HMM.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::Motif.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::Profile.3pm Installing /<>/debian/psortb/usr/share/man/man3/Algorithm::HMM::Hit::Global.3pm Installing /<>/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::AnalysisI.3pm make[1]: Leaving directory '/<>' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms chmod +x debian/psortb/usr/lib/psort/conf/analysis/signal/archaea/check-sig make[1]: Leaving directory '/<>' dh_missing dh_dwz -a dh_strip -a debugedit: debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Algorithm/HMM/HMM.so: Unknown DWARF DW_FORM_0x1f20 6eaca8451da417def6de4a71d4317ac1bebe33b1 debugedit: debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so: Unknown DWARF DW_FORM_0x1f20 e100a569078c77f46bda7822ec19a115b080b25e debugedit: debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.34/auto/Bio/Tools/PSort/ModHMM/ModHMM.so: Unknown DWARF DW_FORM_0x1f21 28b9309d0c392194e84a6a39c30bf35a49fa8a6b dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 149 pkgstriptranslations: processing psortb (in debian/psortb); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/psortb/DEBIAN/control, package psortb, directory debian/psortb pkgstripfiles: Running PNG optimization (using 4 cpus) for package psortb ... pkgstripfiles: No PNG files. dpkg-deb: building package 'psortb' in '../psortb_3.0.6+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../psortb_3.0.6+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../psortb_3.0.6+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-23T09:55:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ psortb_3.0.6+dfsg-3_amd64.changes: ---------------------------------- Format: 1.8 Date: Sun, 24 Apr 2022 11:08:10 +0200 Source: psortb Binary: psortb Built-For-Profiles: noudeb Architecture: amd64 Version: 3.0.6+dfsg-3 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: psortb - bacterial localization prediction tool Changes: psortb (3.0.6+dfsg-3) unstable; urgency=medium . * Team upload. * d/control: psortb now depends on libbio-perl-run-perl, fixing autopkgtest failures. * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) Checksums-Sha1: b2705d0ea22e0b11a37eca7ca22b70bad1f72dc3 7239 psortb_3.0.6+dfsg-3_amd64.buildinfo b6a6db43f63255c419014b1eeaadab6f0e73b2a2 17237962 psortb_3.0.6+dfsg-3_amd64.deb Checksums-Sha256: 2a5aafa81a95edf9226d496b892995f6df946be140ea9b5acc22adb8f249128e 7239 psortb_3.0.6+dfsg-3_amd64.buildinfo cbd27c126dd33198428a00a1b8002430de010e5601e292cc1818f029a7722c5b 17237962 psortb_3.0.6+dfsg-3_amd64.deb Files: 189e89708173946ccfa8f864f3ac5592 7239 science optional psortb_3.0.6+dfsg-3_amd64.buildinfo 8ef4d36e9a70971f599fe35c31716dae 17237962 science optional psortb_3.0.6+dfsg-3_amd64.deb /<>/psortb_3.0.6+dfsg-3_amd64.changes.new could not be renamed to /<>/psortb_3.0.6+dfsg-3_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: psortb Binary: psortb Architecture: amd64 Version: 3.0.6+dfsg-3 Checksums-Md5: 8ef4d36e9a70971f599fe35c31716dae 17237962 psortb_3.0.6+dfsg-3_amd64.deb Checksums-Sha1: b6a6db43f63255c419014b1eeaadab6f0e73b2a2 17237962 psortb_3.0.6+dfsg-3_amd64.deb Checksums-Sha256: cbd27c126dd33198428a00a1b8002430de010e5601e292cc1818f029a7722c5b 17237962 psortb_3.0.6+dfsg-3_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 23 Jun 2022 09:55:58 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bioperl (= 1.7.8-1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3build1), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3ubuntu1), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.50.20220615-4ubuntu1), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.38-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.7.9-4), libcap2 (= 1:2.44-1build3), libcapture-tiny-perl (= 0.48-1), libcc1-0 (= 12.1.0-2ubuntu1), libclass-data-inheritable-perl (= 0.08-3), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libdata-stag-perl (= 0.14-3), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdevel-stacktrace-perl (= 2.0400-1), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libexception-class-perl (= 1.45-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-slurp-perl (= 9999.32-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12.1.0-2ubuntu1), libglib2.0-0 (= 2.72.2-2), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgssapi-krb5-2 (= 1.19.2-2), libhmmer2-dev (= 2.3.2+dfsg-7), libicu71 (= 71.1-3), libio-string-perl (= 1.08-3.1), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-2ubuntu1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblmdb0 (= 0.9.24-1build2), liblsan0 (= 12.1.0-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmbedcrypto7 (= 2.28.0-2), libmbedtls14 (= 2.28.0-2), libmbedx509-1 (= 2.28.0-2), libmodhmm-dev (= 1.0+dfsg-5), libmodhmm0 (= 1.0+dfsg-5), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncursesw6 (= 6.3+20220423-2), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpython3-stdlib (= 3.10.4-0ubuntu2), libpython3.10-minimal (= 3.10.5-1), libpython3.10-stdlib (= 3.10.5-1), libquadmath0 (= 12.1.0-2ubuntu1), libreadline8 (= 8.1.2-1.2), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libsqlite3-0 (= 3.38.5-1), libsquid-dev (= 1.9g+cvs20050121-12), libsquid1 (= 1.9g+cvs20050121-12), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libsub-override-perl (= 0.09-3), libsub-uplevel-perl (= 0.2800-2), libsvm-dev (= 3.24+ds-6), libsvm3 (= 3.24+ds-6), libsvmloc-dev (= 1.0+dfsg-5), libsvmloc0 (= 1.0+dfsg-5), libsystemd0 (= 249.11-0ubuntu4), libtest-deep-perl (= 1.130-1), libtest-differences-perl (= 0.69-1), libtest-exception-perl (= 0.43-2), libtest-most-perl (= 0.37-1), libtest-warn-perl (= 0.36-1), libtext-diff-perl (= 1.45-1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-27.28), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncbi-blast+ (= 2.12.0+ds-3build1), ncbi-blast+-legacy (= 2.12.0+ds-3build1), ncbi-data (= 6.1.20170106+dfsg1-9), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), pftools (= 3.2.12-1), pkg-config (= 0.29.2-1ubuntu3), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.4-0ubuntu2), python3-minimal (= 3.10.4-0ubuntu2), python3.10 (= 3.10.5-1), python3.10-minimal (= 3.10.5-1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1650791290" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ psortb_3.0.6+dfsg-3_amd64.deb ----------------------------- new Debian package, version 2.0. size 17237962 bytes: control archive=4902 bytes. 979 bytes, 16 lines control 15498 bytes, 164 lines md5sums Package: psortb Version: 3.0.6+dfsg-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 116660 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libmodhmm0 (>= 1.0+dfsg), libsquid1 (>= 1.9g+cvs20050121), libstdc++6 (>= 5), libsvmloc0 (>= 1.0+dfsg), perl, perlapi-5.34.0, libbio-perl-perl, libbio-perl-run-perl, libalgorithm-svm-perl, pftools, librpc-xml-perl Section: science Priority: optional Homepage: https://www.psort.org/ Description: bacterial localization prediction tool PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. drwxr-xr-x root/root 0 2022-04-24 09:08 ./ drwxr-xr-x root/root 0 2022-04-24 09:08 ./usr/ drwxr-xr-x root/root 0 2022-04-24 09:08 ./usr/bin/ -rwxr-xr-x root/root 17095 2022-04-24 09:08 ./usr/bin/psort drwxr-xr-x root/root 0 2022-04-24 09:08 ./usr/lib/ drwxr-xr-x root/root 0 2022-04-24 09:08 ./usr/lib/psort/ drwxr-xr-x root/root 0 2017-10-24 22:29 ./usr/lib/psort/conf/ drwxr-xr-x root/root 0 2017-10-24 22:29 ./usr/lib/psort/conf/analysis/ drwxr-xr-x root/root 0 2017-10-24 22:29 ./usr/lib/psort/conf/analysis/modhmm/ -rw-r--r-- root/root 92681 2017-10-24 22:29 ./usr/lib/psort/conf/analysis/modhmm/S_TMHMM_0.92b.hmg -rw-r--r-- root/root 2542 2017-10-24 22:29 ./usr/lib/psort/conf/analysis/modhmm/amino_multi.pri -rw-r--r-- root/root 345 2017-10-24 22:29 ./usr/lib/psort/conf/analysis/modhmm/replacement_letter_multi.rpl drwxr-xr-x root/root 0 2017-10-24 22:29 ./usr/lib/psort/conf/analysis/motif/ drwxr-xr-x root/root 0 2022-04-24 09:08 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+------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 260092 Build-Time: 87 Distribution: kinetic Host Architecture: amd64 Install-Time: 13 Job: psortb_3.0.6+dfsg-3.dsc Machine Architecture: amd64 Package: psortb Package-Time: 103 Source-Version: 3.0.6+dfsg-3 Space: 260092 Status: successful Version: 3.0.6+dfsg-3 -------------------------------------------------------------------------------- Finished at 2022-06-23T09:55:59Z Build needed 00:01:43, 260092k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24052601 Scanning for processes to kill in build PACKAGEBUILD-24052601