diff -Nru mustang-3.2.3/debian/changelog mustang-3.2.3/debian/changelog --- mustang-3.2.3/debian/changelog 2020-03-22 15:51:00.000000000 +0000 +++ mustang-3.2.3/debian/changelog 2020-10-30 10:20:06.000000000 +0000 @@ -1,8 +1,15 @@ -mustang (3.2.3-3build1) focal; urgency=medium +mustang (3.2.3-4) unstable; urgency=medium - * No-change rebuild for libgcc-s1 package name change. + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Remove trailing whitespace in debian/control (routine-update) + * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Use secure URI in Homepage field. - -- Matthias Klose Sun, 22 Mar 2020 16:51:00 +0100 + -- Andreas Tille Fri, 30 Oct 2020 11:20:06 +0100 mustang (3.2.3-3) unstable; urgency=medium @@ -108,7 +115,7 @@ mustang (3.2.0-1) unstable; urgency=low * New upstream version. - * Patches 02-main.cpp.patch and 04-gcc-4.3-exit.patch have been + * Patches 02-main.cpp.patch and 04-gcc-4.3-exit.patch have been incorporated upstream and are no longer required. -- Morten Kjeldgaard Mon, 05 Oct 2009 13:10:26 +0200 @@ -118,17 +125,17 @@ * Converted to quilt patch system. * New uploader email * Added citation.bib file, installed in /usr/share/doc/mustang - + -- Morten Kjeldgaard Sun, 14 Dec 2008 13:55:03 +0100 mustang (3.0-1) unstable; urgency=low [ Nelson A. de Oliveira ] * debian/rules: CFLAGS -> CPPFLAGS - * debian/control: add ${misc:Depends} to binary package, and + * debian/control: add ${misc:Depends} to binary package, and add Suggests: mustang-testdata * Add debian/watch - + [ Morten Kjeldgaard ] * Upload mustang to Debian (Closes: #459637). * debian/control: Maintainer and homepage fields set as per diff -Nru mustang-3.2.3/debian/compat mustang-3.2.3/debian/compat --- mustang-3.2.3/debian/compat 2018-04-09 19:33:59.000000000 +0000 +++ mustang-3.2.3/debian/compat 1970-01-01 00:00:00.000000000 +0000 @@ -1 +0,0 @@ -11 diff -Nru mustang-3.2.3/debian/control mustang-3.2.3/debian/control --- mustang-3.2.3/debian/control 2018-04-09 19:33:59.000000000 +0000 +++ mustang-3.2.3/debian/control 2020-10-30 10:20:06.000000000 +0000 @@ -3,11 +3,12 @@ Uploaders: Andreas Tille Section: science Priority: optional -Build-Depends: debhelper (>= 11~) -Standards-Version: 4.1.4 +Build-Depends: debhelper-compat (= 13) +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/mustang Vcs-Git: https://salsa.debian.org/med-team/mustang.git -Homepage: http://lcb.infotech.monash.edu.au/mustang/ +Homepage: https://lcb.infotech.monash.edu.au/mustang/ +Rules-Requires-Root: no Package: mustang Architecture: any @@ -28,8 +29,8 @@ Enhances: mustang Description: multiple structural alignment of proteins, test data This package contains a larger set of test data than what - comes with the binary package. + comes with the binary package. . - To run the test, change to a directory where you have write access, + To run the test, change to a directory where you have write access, then issue the command: - mustang -f /usr/share/doc/mustang-testdata/examples/test_zf-CCHH + mustang -f /usr/share/doc/mustang-testdata/examples/test_zf-CCHH diff -Nru mustang-3.2.3/debian/salsa-ci.yml mustang-3.2.3/debian/salsa-ci.yml --- mustang-3.2.3/debian/salsa-ci.yml 1970-01-01 00:00:00.000000000 +0000 +++ mustang-3.2.3/debian/salsa-ci.yml 2020-10-30 10:20:06.000000000 +0000 @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml diff -Nru mustang-3.2.3/debian/tests/run-unit-test mustang-3.2.3/debian/tests/run-unit-test --- mustang-3.2.3/debian/tests/run-unit-test 2018-04-09 19:33:59.000000000 +0000 +++ mustang-3.2.3/debian/tests/run-unit-test 2020-10-30 10:20:06.000000000 +0000 @@ -11,10 +11,10 @@ # The process will run in this directory: pkg=mustang -if [ "$ADTTMP" = "" ] ; then - ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` fi -cd $ADTTMP +cd $AUTOPKGTEST_TMP cp -a /usr/share/doc/${pkg}/examples/* . find . -name "*.gz" -exec gunzip \{\} \; @@ -25,6 +25,6 @@ mustang -f ./test_zf-CCHH-small -echo Results are in $ADTTMP/results.html and $ADTTMP/results.pdb +echo Results are in $AUTOPKGTEST_TMP/results.html and $AUTOPKGTEST_TMP/results.pdb -# rm -f $ADTTMP/* +# rm -f $AUTOPKGTEST_TMP/*