The dock should shows a little icon of any minimized window near the window's thumbdnail when minimized
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jac3n
I suggest to copy the OS X 's dock's behavior for the minimized windows that are identified by they thumb.
When severals windows are minimized, it's not very easy to identify them by there thumbs. Adding a small version of the windows' (X or launcher) icon in the bottom right corner, over the thumbs, would make the recognition easier.
Greats !
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